Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000990 |
| length | 1217 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 3 |
| gene id | XLOC_000569 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 45663727 ~ 45669444 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0048193 | Golgi vesicle transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:1990070 | TRAPPI protein complex | cellular_component |
| GO:1990071 | TRAPPII protein complex | cellular_component |
| GO:1990072 | TRAPPIII protein complex | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0030008 | TRAPP complex | cellular_component |
| id | description |
|---|---|
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-040718-185 | Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPPI protein complex; TRAPPII protein complex; and TRAPPIII protein complex. Orthologous to human TRAPPC5 (trafficking protein particle complex subunit 5). |
| ensembl_id | ENSDART00000038574 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003123 | lncRNA | upstream | 15481 | 45644766 ~ 45648246 (+) | True | XLOC_000568 |
| TCONS_00003122 | lncRNA | upstream | 264906 | 45383604 ~ 45398821 (+) | True | XLOC_000567 |
| TCONS_00000974 | lncRNA | upstream | 654754 | 45004906 ~ 45008973 (+) | False | XLOC_000559 |
| TCONS_00000969 | lncRNA | upstream | 690801 | 44970569 ~ 44972926 (+) | True | XLOC_000557 |
| TCONS_00000968 | lncRNA | upstream | 692487 | 44968462 ~ 44971240 (+) | False | XLOC_000557 |
| TCONS_00003124 | lncRNA | downstream | 197596 | 45867040 ~ 45869497 (+) | False | XLOC_000575 |
| TCONS_00003125 | lncRNA | downstream | 197613 | 45867057 ~ 45869497 (+) | True | XLOC_000575 |
| TCONS_00003126 | lncRNA | downstream | 363276 | 46032720 ~ 46040123 (+) | False | XLOC_000579 |
| TCONS_00003127 | lncRNA | downstream | 363276 | 46032720 ~ 46061493 (+) | False | XLOC_000579 |
| TCONS_00003128 | lncRNA | downstream | 363307 | 46032751 ~ 46040123 (+) | False | XLOC_000579 |
| TCONS_00000989 | mRNA | upstream | 297305 | 45351890 ~ 45366422 (+) | True | XLOC_000566 |
| TCONS_00000988 | mRNA | upstream | 333276 | 45323400 ~ 45330451 (+) | True | XLOC_000565 |
| TCONS_00000986 | mRNA | upstream | 336219 | 45323142 ~ 45327508 (+) | False | XLOC_000565 |
| TCONS_00000987 | mRNA | upstream | 338977 | 45323400 ~ 45324750 (+) | False | XLOC_000565 |
| TCONS_00000983 | mRNA | upstream | 380953 | 45217425 ~ 45282774 (+) | False | XLOC_000564 |
| TCONS_00000993 | mRNA | downstream | 2243 | 45671687 ~ 45700574 (+) | True | XLOC_000570 |
| TCONS_00000994 | mRNA | downstream | 37775 | 45707219 ~ 45744854 (+) | False | XLOC_000571 |
| TCONS_00000995 | mRNA | downstream | 70739 | 45740183 ~ 45744854 (+) | True | XLOC_000571 |
| TCONS_00000996 | mRNA | downstream | 85424 | 45754868 ~ 45832984 (+) | False | XLOC_000572 |
| TCONS_00000998 | mRNA | downstream | 114442 | 45783886 ~ 45836167 (+) | True | XLOC_000572 |
| TCONS_00000982 | other | upstream | 493075 | 45170046 ~ 45170652 (+) | True | XLOC_000563 |
| TCONS_00000975 | other | upstream | 654111 | 45007403 ~ 45009616 (+) | True | XLOC_000559 |
| TCONS_00000971 | other | upstream | 665957 | 44986996 ~ 44997770 (+) | False | XLOC_000558 |
| TCONS_00000970 | other | upstream | 674181 | 44983825 ~ 44989546 (+) | False | XLOC_000558 |
| TCONS_00000949 | other | upstream | 893672 | 44769034 ~ 44770055 (+) | True | XLOC_000548 |
| TCONS_00000997 | other | downstream | 98972 | 45768416 ~ 45768530 (+) | True | XLOC_000573 |
| TCONS_00001013 | other | downstream | 731168 | 46400612 ~ 46401636 (+) | True | XLOC_000586 |
| TCONS_00001019 | other | downstream | 913023 | 46582467 ~ 46586602 (+) | True | XLOC_000588 |
| TCONS_00001025 | other | downstream | 1420057 | 47089501 ~ 47095865 (+) | False | XLOC_000596 |
| TCONS_00001027 | other | downstream | 1426381 | 47095825 ~ 47101796 (+) | True | XLOC_000596 |
