XLOC_000548 (si:dkey-9i23.4)


Basic Information

Item Value
gene id XLOC_000548
gene name si:dkey-9i23.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44767657 ~ 44770055 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000948
GTATGCACAGGAGGAAGACTGAAGAGCAAGAACAATGTGGAAAGCAGGATCTATTGGCGTTCTGCTGGTTCTTCTTTTTGGAAGTGGCAACTTCTTCAAAATGGAGAGAGGTTTTCATGCTGGAGGTGTGAATGCCACCGAGAAGTGCTCAATGCCGAAAGCATGTGATGTGCCTGGATTCTCTGATTGGTTCAGAGTGGGTCAACGCTGTGTCAAATACTTCTCCAGTCGCCTAAACTTCACTGAAGCTGAGTTCAGTTGCAGGACCAAAGCCCCTAGGGCACATCTGGTGTCAGTGCATAATTCACAGGATAACAGTAACTTGCTCTGCATTGTGAAAAAATTTAACCCAAAAAGCCTGCGCATCTGGCTCGGGGCCTATGAATTATTTCAGTCTGGTGAGTTCTTCTGGCTCGATGGATCCTTCTGGAATTTTAATCAATGGGTTCCTGGCGAGCCCAATCATATGTACACTTACACTGAGGAATGTGTGGAGATGAACTGGAGAGAAATTGGCAAGTGGAATGACGCCACTTGCAGTGTCAAGAAAAGCTTCATCTGTGCCTTCAAGCGTAAGGAGTTCATGGAAATACGCTCTGAGTGATCTGCGCTTTTATCATCATGTGTATCTTTCTGCACGTTTTCATACATTTTCGCAtccataaaaaagtaaaaaaaaataataataaagagattTTTTGCTA
>TCONS_00000949
ACTGAAGCTGAGGTATATGCTGTAAAGTAGCACTACACTCTCTTATTAGTCTCcagattattaataaaataaataaaaatattctgtacactgaaataaagaataattaattggatttacaattttttaagTTCAGTTGCAGGACCAAAGCCCCTAGGGCACATCTGGTGTCAGTGCATAATTCACAGGATAACAGTAACTTGCTCTGCATTGTGAAAAAATTTAACCCAAAAAGCCTGCGCATCTGGCTCGGGGCCTATGAATTATTTCAGTCTGGTGAGTTCTTCTGGCTCGATGGATCCTTCTGGAATTTTAATCAATGGGTTCCTGGCGAGCCCAATCATATGTACACTTACACTGAGGAATGTGTGGAGATGAACTGGAGAGAAATTGGCAAGTGGAATGACGCCACTTGCAGTGTCAAGAAAAGCTTCATCTGTGCCTTCAAGCGTAAGGAGTTCATGGAAATACGCTCTGAGTGATCTGCGCTTTTATCATCATGTGTATCTTTCTGCACGTTTTCATACATTTTCGCAtccataaaaaagtaaaaaaaaataataataaagagattTTTTGCTAT

Function

symbol description
si:dkey-9i23.4 Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-363 Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

Ensembl:

ensembl_id ENSDARG00000051993

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000948 False 704 mRNA 0.43 6 44767657 44770054
TCONS_00000949 True 583 processed_transcript 0.38 4 44769034 44770055

Neighbor

gene id symbol gene type direction distance location
XLOC_000547 p2rx3b coding upstream 9269 44746154 ~ 44758388 (+)
XLOC_000546 ssrp1b coding upstream 29726 44710955 ~ 44737931 (+)
XLOC_000545 NA coding upstream 113689 44647908 ~ 44653968 (+)
XLOC_000543 med19b coding upstream 176168 44582369 ~ 44591489 (+)
XLOC_000544 BX511158.1 coding upstream 177276 44590267 ~ 44590381 (+)
XLOC_000549 si:dkey-9i23.5 coding downstream 10794 44780849 ~ 44783558 (+)
XLOC_000550 tmem187 coding downstream 30243 44800298 ~ 44801179 (+)
XLOC_000551 ndufs8a coding downstream 44267 44814322 ~ 44823071 (+)
XLOC_000552 NA coding downstream 56265 44826320 ~ 44835738 (+)
XLOC_000553 kdm2aa coding downstream 68651 44838706 ~ 44869972 (+)
XLOC_000542 NA non-coding upstream 196788 44567513 ~ 44570869 (+)
XLOC_000541 NA non-coding upstream 201224 44523368 ~ 44566433 (+)
XLOC_000540 BX908740.1 non-coding upstream 260404 44507134 ~ 44507253 (+)
XLOC_000557 CU929294.2 non-coding downstream 198407 44968462 ~ 44972926 (+)
XLOC_000558 CU929294.1 non-coding downstream 213770 44983825 ~ 44997770 (+)
XLOC_000563 AL953855.1 non-coding downstream 399991 45170046 ~ 45170652 (+)
XLOC_000567 NA non-coding downstream 613549 45383604 ~ 45398821 (+)

Expression


Co-expression Network