XLOC_000546 (ssrp1b)


Basic Information

Item Value
gene id XLOC_000546
gene name ssrp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44710955 ~ 44737931 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000942
CGAAGGCGTTCCTGCGCGCCGCACATCTACGCTCACGGGACTCGGCCTTGATCCTCTCGCCGAATAACAGTCCATTCTGTCTACTCTGACATGAGTGACACTTTGGAGTTCAATGAAATTTATCAGGAGGTCAAGGGCTCATGGAATGACGGCCGCCTGCGCTTCAGTAAGCAGACAGTGGTGTATAAAAACAGTAAGACCGGGAAGGTGGACACTATTCCGGTCCCTGAACTCACTCAGGCCCAGTGGAGGAGAGTCTGTCTGGGTCACGGCATCAAACTATGGACCAGCACTGGCCACATCTACAAATATGATGGCTTTAAAGACGCAGACCTTGAGAAGATCTCAGAATACTTCAAAGACAACTACAAAGTGGAGCTAACAGAGAAAGACATGTGTGTTAAGGGCTGGAATTGGGGCACTGCTAAATTTAATGGGCCGTTGCTTTCCTTTGACGTGAATGACAGCCCTACATTTGAGATTCCTCTCTCCAGTGTATCCCAGTGTACGACGGGTAAGAATGAGGTGACAGTGGAGTTTCATCAGAATGATGACACAGAGGTGTCTCTCATGGAGGTGCGCTTCTACGTCCCACCCACCACAGGGGACGAGGGTTCAGACCCGGTAGAGGCATTTGCTCAGAATGTGCTGTCGAAGGCAGATGTCATCCAGGCCACAGGAGATGCTGTTTGTATCTTCAGAGAGCTGCAGTGCCTCACGCCTAGGGGCagGTACGATATCCGTATTTATCCAACATTCCTTCATCTACACGGTAAGACATTTGACTACAAGATCCCGTACACCACAGTGCTCCGCCTCTTCCTGTTGCCTCATAAAGACCAGCGGCAAATGTTCTTCGTGATCAGTCTGGACCCCCCTATTAAACAGGGTCAAACACGCTATCACTTTCTCATTCTTCTGTTCTCCAAGGAAGAAACCATCAGCCTCACACTCAAcatgaatgaGGACGAGGTGGAGAGGCGTTTTGAaggaaaacttaataaaaacatgTCCGGCTCTCTCTATGAGATGGTCAGCAGGGTCATGAAAGCCTTGGTCAACAGGAAGATCACAGTGCCTGGAAATTTCCAAGGTCACTCAGGAGCTCAGTGTATAACCTGCTCCTATAAGGCCAGTTCAGGGCTGCTGTATCCCCTGGAAAGAGGTTTCATCTACGTGCACAAGCCCCCAGTGCACCTGCGTTTTGAGGAGATCGCCTGTGTGAACTTCGCCCGCGGGACCACCACGACCCGCTCCTTCGATTTCGAGATCGAGACCAAGCAAGGCAATCAGTACACCTTCAGCAGCATCGAGAGGGAGGAATATGGGAAGCTCTTCGACTTTGTCAATGCTAAGAAGCTAAGCATAAAGAACCGAGGCTTCAAAGAGGGTATGAAAGGTAACGATGACATGTACAGTGACTCTGACGAAGACCAGCACGATGCATATCTGGAGCGTATGAAAGAAGAGGGCAAGATCCGCGAAGAGGGCAATGACAGCGATGACTCGGAGGGCGAGAGTGATGAATCGTTTAATCCTGGTGAAGAAGATGAGGACATAGCAGAAGAGTATGACAGTAAGGCTTCTGCCAGTGAAAGCAGTGCTGAAgaaggagacagtgatgaagacCGCAAGAAGAAATCAGCTAAGAAGGTCAAATTTGTCAAGGAAAGAAAACCACGCAAGAAAGAGAAAAAGGTCAAAGACAGCGGCGCCCCCAAGAGGCCAATGAGTGCCTACATGCTCTGGCTTAACTCAAGCAGAGACCGCATTAAATCAGAGAATCCAGGCATCTCTATCACAGAAATCTCCAAAAAGGCCGGAGAAATGTGGAAACAACTTGGCAAAGACAAGAAagagGAGTGGGATGGAAAAGCAGAGGAAGCAAAGAAAGAGTACGATCGAGCAATGAGAGAGTATAGGGAGAGTGGCGGAGGCTCATCTGGCAGCTCCAAAAAGGAAAGGAAGAAGAAAAGAGGGAGGAATGAAGAAAAGAGGAAAAGGAAATCAGGGgctgggagagagaaagagaaggagcGATCTACAGGCAACGACAGCTTTAAGAGTCGAGAGTTCATATCCAGCGAAGAGAGCTCATCAGAGTCTGACAAAGGAAAGAAACGCAAGCGCAAGGGGTCtgataatgaaaaagaagaggAAGCGGTCAGCACTCCAGCCAGCTCAGAGTCCGGCTCAGACTGAAAGACACAGAAACAGGACAGTGGAACATAACCTTAACCTACTTTTTCACTACATTGTATTGCACATGACCTGATGAAATTCTTATTTTAGTCTATAATGCATCGTAACATGCTAAGATTCTGAAGTGTTTATACCTTTGGAAATGGTGATGTtcactttaaagggacagttcacccaaacattgtaattctgtcatttattgctAATCTAATGATCTAATATTGTGTTAAAGGAGACTGGAGCTGTCATGATTCAAGATtacttattttacagtacatcaaGGCTCAGAAGAACACaagggtaaactgtccctttaaaaatgcTGTGTATtcgttttacttttgcttttagtGTTGTCCGTGTTCTAATGACTGTTTACTAGAGGTGTAACGGATGATCCATGATctgtacggatcaca
>TCONS_00000943
GCACATCTACGCTCACGGGACTCGGCCTTGATCCTCTCGCCGAATAACACTTTTAAACGTCACAGGTCCATTCTGTCTACTCTGACATGAGTGACACTTTGGAGTTCAATGAAATTTATCAGGAGGTCAAGGGCTCATGGAATGACGGCCGCCTGCGCTTCAGTAAGCAGACAGTGGTGTATAAAAACAGTAAGACCGGGAAGGTGGACACTATTCCGGTCCCTGAACTCACTCAGGCCCAGTGGAGGAGAGTCTGTCTGGGTCACGGCATCAAACTATGGACCAGCACTGGCCACATCTACAAATATGATGGCTTTAAAGACGCAGACCTTGAGAAGATCTCAGAATACTTCAAAGACAACTACAAAGTGGAGCTAACAGAGAAAGACATGTGTGTTAAGGGCTGGAATTGGGGCACTGCTAAATTTAATGGGCCGTTGCTTTCCTTTGACGTGAATGACAGCCCTACATTTGAGATTCCTCTCTCCAGTGTATCCCAGTGTACGACGGGTAAGAATGAGGTGACAGTGGAGTTTCATCAGAATGATGACACAGAGGTGTCTCTCATGGAGGTGCGCTTCTACGTCCCACCCACCACAGGGGACGAGGGTTCAGACCCGGTAGAGGCATTTGCTCAGAATGTGCTGTCGAAGGCAGATGTCATCCAGGCCACAGGAGATGCTGTTTGTATCTTCAGAGAGCTGCAGTGCCTCACGCCTAGGGGCagGTACGATATCCGTATTTATCCAACATTCCTTCATCTACACGGTAAGACATTTGACTACAAGATCCCGTACACCACAGTGCTCCGCCTCTTCCTGTTGCCTCATAAAGACCAGCGGCAAATGTTCTTCGTGATCAGTCTGGACCCCCCTATTAAACAGGGTCAAACACGCTATCACTTTCTCATTCTTCTGTTCTCCAAGGAAGAAACCATCAGCCTCACACTCAAcatgaatgaGGACGAGGTGGAGAGGCGTTTTGAaggaaaacttaataaaaacatgTCCGGCTCTCTCTATGAGATGGTCAGCAGGGTCATGAAAGCCTTGGTCAACAGGAAGATCACAGTGCCTGGAAATTTCCAAGGTCACTCAGGAGCTCAGTGTATAACCTGCTCCTATAAGGCCAGTTCAGGGCTGCTGTATCCCCTGGAAAGAGGTTTCATCTACGTGCACAAGCCCCCAGTGCACCTGCGTTTTGAGGAGATCGCCTGTGTGAACTTCGCCCGCGGGACCACCACGACCCGCTCCTTCGATTTCGAGATCGAGACCAAGCAAGGCAATCAGTACACCTTCAGCAGCATCGAGAGGGAGGAATATGGGAAGCTCTTCGACTTTGTCAATGCTAAGAAGCTAAGCATAAAGAACCGAGGCTTCAAAGAGAAAAAGGGTATGAAAGGTAACGATGACATGTACAGTGACTCTGACGAAGACCAGCACGATGCATATCTGGAGCGTATGAAAGAAGAGGGCAAGATCCGCGAAGAGGGCAATGACAGCGATGACTCGGAGGGCGAGAGTGATGAATCGTTTAATCCTGGTGAAGAAGATGAGGACATAGCAGAAGAGTATGACAGTAAGGCTTCTGCCAGTGAAAGCAGTGCTGAAgaaggagacagtgatgaagacCGCAAGAAGAAATCAGCTAAGAAGGTCAAATTTGTCAAGGAAAGAAAACCACGCAA
>TCONS_00000945
ATGAGTGACACTTTGGAGTTCAATGAAATTTATCAGGAGGTCAAGGGCTCATGGAATGACGGCCGCCTGCGCTTCAGTAAGCAGACAGTGGTGTATAAAAACAGTAAGACCGGGAAGGTGGACACTATTCCGGTCCCTGAACTCACTCAGGCCCAGTGGAGGAGAGTCTGTCTGGGTCACGGCATCAAACTATGGACCAGCACTGGCCACATCTACAAATATGATGGCTTTAAAGACGCAGACCTTGAGAAGATCTCAGAATACTTCAAAGACAACTACAAAGTGGAGCTAACAGAGAAAGACATGTGTGTTAAGGGCTGGAATTGGGGCACTGCTAAATTTAATGGGCCGTTGCTTTCCTTTGACGTGAATGACAGCCCTACATTTGAGATTCCTCTCTCCAGTGTATCCCAGTGTACGACGGGTAAGAATGAGGTGACAGTGGAGTTTCATCAGAATGATGACACAGAGGTGTCTCTCATGGAGGTGCGCTTCTACGTCCCACCCACCACAGGGGACGAGGGTTCAGACCCGGTAGAGGCATTTGCTCAGAATGTGCTGTCGAAGGCAGATGTCATCCAGGCCACAGGAGATGCTGTTTGTATCTTCAGAGAGCTGCAGTGCCTCACGCCTAGGGGCagGTACGATATCCGTATTTATCCAACATTCCTTCATCTACACGGTAAGACATTTGACTACAAGATCCCGTACACCACAGTGCTCCGCCTCTTCCTGTTGCCTCATAAAGACCAGCGGCAAATGTTCTTCGTGATCAGTCTGGACCCCCCTATTAAACAGGGTCAAACACGCTATCACTTTCTCATTCTTCTGTTCTCCAAGGAAGAAACCATCAGCCTCACACTCAAcatgaatgaGGACGAGGTGGAGAGGCGTTTTGAaggaaaacttaataaaaacatgTCCGGCTCTCTCTATGAGATGGTCAGCAGGGTCATGAAAGCCTTGGTCAACAGGAAGATCACAGTGCCTGGAAATTTCCAAGGTCACTCAGGAGCTCAGTGTATAACCTGCTCCTATAAGGCCAGTTCAGGGCTGCTGTATCCCCTGGAAAGAGGTTTCATCTACGTGCACAAGCCCCCAGTGCACCTGCGTTTTGAGGAGATCGCCTGTGTGAACTTCGCCCGCGGGACCACCACGACCCGCTCCTTCGATTTCGAGATCGAGACCAAGCAAGGCAATCAGTACACCTTCAGCAGCATCGAGAGGGAGGAATATGGGAAGCTCTTCGACTTTGTCAATGCTAAGAAGCTAAGCATAAAGAACCGAGGCTTCAAAGAGGGTATGAAAGGTAACGATGACATGTACAGTGACTCTGACGAAGACCAGCACGATGCATATCTGGAGCGTATGAAAGAAGAGGGCAAGATCCGCGAAGAGGGCAATGACAGCGATGACTCGGAGGGCGAGAGTGGTGAGTATGACAGTAAGGCTTCTGCCAGTGAAAGCAGTGCTGAAgaaggagacagtgatgaagacCGCAAGAAGAAATCAGCTAAGAAGGTCAAATTTGTCAAGGAAAGAAAACCACGCAAGAAAGAGAAAAAGGTCAAAGACAGCGGCGCCCCCAAGAGGCCAATGAGTGCCTACATGCTCTGGCTTAACTCAAGCAGAGACCGCATTAAATCAGAGAATCCAGGCATCTCTATCACAGAAATCTCCAAAAAGGCCGGAGAAATGTGGAAACAACTTGGCAAAGACAAGAAagagGAGTGGGATGGAAAAGCAGAGGAAGCAAAGAAAGAGTACGATCGAGCAATGAGAGAGTATAGGGAGAGTGGCGGAGGCTCATCTGGCAGCTCCAAAAAGGAAAGGAAGAAGAAAAGAGGGAGGAATGAAGAAAAGAGGAAAAGGAAATCAGGGgctgggagagagaaagagaaggagcGATCTACAGGCAACGACAGCTTTAAGAGTCGAGAGTTCATATCCAGCGAAGAGAGCTCATCAGAGTCTGACAAAGGAAAGAAACGCAAGCTCTCGCTCTCATTCCTGCTGCCCTTTACACAGGGGTCtgataatgaaaaagaagaggAAGCGGTCAGCACTCCAGCCAGCTCAGAGTCCGGCTCAGACTGA
>TCONS_00000944
ATGAGTGACACTTTGGAGTTCAATGAAATTTATCAGGAGGTCAAGGGCTCATGGAATGACGGCCGCCTGCGCTTCAGTAAGCAGACAGTGGTGTATAAAAACAGTAAGACCGGGAAGGTGGACACTATTCCGGTCCCTGAACTCACTCAGGCCCAGTGGAGGAGAGTCTGTCTGGGTCACGGCATCAAACTATGGACCAGCACTGGCCACATCTACAAATATGATGGCTTTAAAGACGCAGACCTTGAGAAGATCTCAGAATACTTCAAAGACAACTACAAAGTGGAGCTAACAGAGAAAGACATGTGTGTTAAGGGCTGGAATTGGGGCACTGCTAAATTTAATGGGCCGTTGCTTTCCTTTGACGTGAATGACAGCCCTACATTTGAGATTCCTCTCTCCAGTGTATCCCAGTGTACGACGGGTAAGAATGAGGTGACAGTGGAGTTTCATCAGAATGATGACACAGAGGTGTCTCTCATGGAGGTGCGCTTCTACGTCCCACCCACCACAGGGGACGAGGGTTCAGACCCGGTAGAGGCATTTGCTCAGAATGTGCTGTCGAAGGCAGATGTCATCCAGGCCACAGGAGATGCTGTTTGTATCTTCAGAGAGCTGCAGTGCCTCACGCCTAGGGGCagGTACGATATCCGTATTTATCCAACATTCCTTCATCTACACGGTAAGACATTTGACTACAAGATCCCGTACACCACAGTGCTCCGCCTCTTCCTGTTGCCTCATAAAGACCAGCGGCAAATGTTCTTCGTGATCAGTCTGGACCCCCCTATTAAACAGGGTCAAACACGCTATCACTTTCTCATTCTTCTGTTCTCCAAGGAAGAAACCATCAGCCTCACACTCAAcatgaatgaGGACGAGGTGGAGAGGCGTTTTGAaggaaaacttaataaaaacatgTCCGGCTCTCTCTATGAGATGGTCAGCAGGGTCATGAAAGCCTTGGTCAACAGGAAGATCACAGTGCCTGGAAATTTCCAAGGTCACTCAGGAGCTCAGTGTATAACCTGCTCCTATAAGGCCAGTTCAGGGCTGCTGTATCCCCTGGAAAGAGGTTTCATCTACGTGCACAAGCCCCCAGTGCACCTGCGTTTTGAGGAGATCGCCTGTGTGAACTTCGCCCGCGGGACCACCACGACCCGCTCCTTCGATTTCGAGATCGAGACCAAGCAAGGCAATCAGTACACCTTCAGCAGCATCGAGAGGGAGGAATATGGGAAGCTCTTCGACTTTGTCAATGCTAAGAAGCTAAGCATAAAGAACCGAGGCTTCAAAGAGGGTATGAAAGGTAACGATGACATGTACAGTGACTCTGACGAAGACCAGCACGATGCATATCTGGAGCGTATGAAAGAAGAGGGCAAGATCCGCGAAGAGGGCAATGACAGCGATGACTCGGAGGGCGAGAGTGGTGAGTATGACAGTAAGGCTTCTGCCAGTGAAAGCAGTGCTGAAgaaggagacagtgatgaagacCGCAAGAAGAAATCAGCTAAGAAGGTCAAATTTGTCAAGGAAAGAAAACCACGCAAGAAAGAGAAAAAGGTCAAAGACAGCGGCGCCCCCAAGAGGCCAATGAGTGCCTACATGCTCTGGCTTAACTCAAGCAGAGACCGCATTAAATCAGAGAATCCAGGCATCTCTATCACAGAAATCTCCAAAAAGGCCGGAGAAATGTGGAAACAACTTGGCAAAGACAAGAAagagGAGTGGGATGGAAAAGCAGAGGAAGCAAAGAAAGAGTACGATCGAGCAATGAGAGAGTATAGGGAGAGTGGCGGAGGCTCATCTGGCAGCTCCAAAAAGGAAAGGAAGAAGAAAAGAGGGAGGAATGAAGAAAAGAGGAAAAGGAAATCAGGGaaggagcGATCTACAGGCAACGACAGCTTTAAGAGTCGAGAGTTCATATCCAGCGAAGAGAGCTCATCAGAGTCTGACAAAGGAAAGAAACGCAAGCGCAAGGGGTCtgataatgaaaaagaagaggAAGCGGTCAGCACTCCAGCCAGCTCAGAGTCCGGCTCAGACTGA

Function

symbol description
ssrp1b Predicted to enable histone binding activity and nucleosome binding activity. Predicted to be involved in regulation of chromatin organization. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in chromosome and nucleus. Predicted to be part of FACT complex. Orthologous to human SSRP1 (structure specific recognition protein 1).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0035101 FACT complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0042393 histone binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-209 Predicted to enable histone binding activity and nucleosome binding activity. Predicted to be involved in regulation of chromatin organization. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in chromosome and nucleus. Predicted to be part of FACT complex. Orthologous to human SSRP1 (structure specific recognition protein 1).

Ensembl:

ensembl_id ENSDARG00000016994

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000942 False 2621 mRNA 0.47 18 44710955 44737931
TCONS_00000943 False 1687 mRNA 0.49 15 44710975 44730367
TCONS_00000945 False 2097 mRNA 0.49 16 44711446 44737512
TCONS_00000944 True 2052 mRNA 0.49 17 44711446 44737512

Neighbor

gene id symbol gene type direction distance location
XLOC_000545 NA coding upstream 56987 44647908 ~ 44653968 (+)
XLOC_000543 med19b coding upstream 119466 44582369 ~ 44591489 (+)
XLOC_000544 BX511158.1 coding upstream 120574 44590267 ~ 44590381 (+)
XLOC_000542 NA coding upstream 140086 44567513 ~ 44570869 (+)
XLOC_000541 NA coding upstream 144522 44523368 ~ 44566433 (+)
XLOC_000547 p2rx3b coding downstream 8223 44746154 ~ 44758388 (+)
XLOC_000548 si:dkey-9i23.4 coding downstream 29726 44767657 ~ 44770055 (+)
XLOC_000549 si:dkey-9i23.5 coding downstream 42918 44780849 ~ 44783558 (+)
XLOC_000550 tmem187 coding downstream 62367 44800298 ~ 44801179 (+)
XLOC_000551 ndufs8a coding downstream 76391 44814322 ~ 44823071 (+)
XLOC_000540 BX908740.1 non-coding upstream 203702 44507134 ~ 44507253 (+)
XLOC_000552 NA non-coding downstream 88389 44826320 ~ 44835738 (+)
XLOC_000557 CU929294.2 non-coding downstream 230531 44968462 ~ 44972926 (+)
XLOC_000558 CU929294.1 non-coding downstream 245894 44983825 ~ 44997770 (+)
XLOC_000563 AL953855.1 non-coding downstream 432115 45170046 ~ 45170652 (+)
XLOC_000567 NA non-coding downstream 645673 45383604 ~ 45398821 (+)

Expression


Co-expression Network