XLOC_000547 (p2rx3b)


Basic Information

Item Value
gene id XLOC_000547
gene name p2rx3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44746154 ~ 44758388 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000946
agtgacattttaatagGCAAACAAACACGGAGGATTATTGAAGAGGTTTTGGACTTTTATCTACAAAAAGCAGGATAAAGCAACTAGACGGATTCGCCACCAGCATTGATTATATTCTTAATTGCAAAATCACACAAATATATTGATACACTTGGAGTGTCATTTTTGTGAATGCAGCAGTGCTCTGGAAAAATGTGGACCTGtataacagatttctttacatatGAGACTACCAAGTCTGTGGTGGTAAAGAGCTGGACCATCGGCATCATCAACCGGGTCGTGCAACTCCTCATCATCACATACTTCATCGGCTGGGTGTTTTTGTATGAGAAAGCATATCAAGTGAGAGACACGGCCATCGAGTCTTCAGTCATGACTAAAGTCAAAGGCTTTGGGGAGTACAACAACCGCATCATGGATGTGGCAGATTATGTCACACCTACTCAAGGGGCGTCGGTGTTCTGCGTCATCACTAAACTCATCACCACAGAAAACCAAGTTCAGGGAAACTGTCCAGAGAGCGAGTTGAAATTCAAATGTGAGAATGACATTAGATGTAAGCAGCTGATGACAAAACCATCTAGTAATGGGTTGCTGACGGGGCGGTGTGTGCACTTTAATACAACTCACAAAACTTGTGAGATCAAAGGATGGTGCCCTGCAGAGATTGACGAAGTCCAGCCAAACCCCATGATGGAGGTGGAGAACTTCACCATATTTATCAAGAACAGCATTCGCTTCCCACGTTTTAACTTCACCAAGGGAAACTTTTTGGCCAACATCAACAGTTCATACATAAAGGGATGTAATTTTGACTTTGAGAGGAACATGTATTGCCCGATATTCAAAGTGGGGGATGTGATCCGATTCGCCCAGCAAAACTTTACCACTCTTGCTACAAAAgGGGGAGTGATAGGAATAAAAATAGCCTGGGTGTGTGATTTAGACAAGGCAGATGATGAGTGTAAGCCTGCCTATTCCTTCACCCGTCTTGACGCCATGTCAGAGAAGACCACCGTTTCTCCAGGATACAACTTCAGGTACGCTAAGTATTTTAAAATGGAGAACGGAACTGAGTATCGCACTCTGCTGAAAGCCTACGCCATCAGATTTGATGTGCTGGTCAATGGAGATGCAGGAAAATTTGACATGATCCCAACTCTAATCAACATGGTGGCTGCTTTCACCTCTGTTGGTGTGGGTACAGTGCTTTGCGATATCATTTTGCTGAACTTCTTGAAAGGAGCAGACCAATATAAGGCCAAGAAATTTGAAGagGTGTCAGATTCAAATATTCAAAGCTCTGGTTCACTGTACAGGACCAGAGACCACAGCCAGCAGTCCATCAAAACCGACGAGAAGTTCTCCAACGACTCCGGCGCCTTTTCCATCGAACGTTACAGCTAATAATGCTAATCACAGGATTGAAATGAGTCGATTTGTAACATTATCATTTCTTCATCAAGTCATCGCACTTAATAATCTTTGTCATTGTCATTAATGATTTAGCATTATTTTGAACTAACCCTTAAACTTTACACACAAAACAGACTAAACGCAGGGTGCGAaatgcgaattacaggggggtaaTCCTCCTcctaattaacgcttgatccccctgaaggacgtcaaaacaagatgtatgcaGGATCAGCCCTTTAATACTGAAAATTATTTCCGTCTGAtctgtattttatataattaaaattgattattaaaataatagatcaaataaaacacatttgaacacccctataacggttcataccattgtgaatgcataatcgcgcCAAATCAGTTTTGCGGGGAAAATATTCGGGGAAAATACAGTCTGAAACTGCAGATGTGGCCCACCGATAGACATCGTAAGTGTTTAAAAGACTGTTTTCTCGAAAAATAGGAGTTTGTTTCTACATACAGCCTTAAAGTAAtgtcaaattagatgcatagtttgtataaTATGACCTTCAGTAACTTCTAAAATAGTTTATCAGGGGCTAACGTTAATTTACTGTGGGGCAGAATACTCGAAATATTCGCCTAAACACTGCAAACCTAAAGACGTTTTTATCAATAAATTAggtataatgtaaataaatacataaatttgatTCACTAAATTCCCAAACATTACCGAAAAGGTTGACCCTTCCGATCGTATATGTATAATTCGCACCTCAACTAACGTTAAACGACTACATTTCCTACATTTTCCTTAaccatgaaaaatattttaattataaccaTGTCCCAAATGCTAATTGTTAAAATTAAACTCAGTCAAAATATACTATATGACTAATCAAATATCTAAAATAGtactttattttgtaaataatagcaTTAAGTACATACTTAAATTATGTGATGTATGCTTATAGTGTTTGCATGGCCTTTACACAACAGCAGTTTAATAATTATGTCACTGTTCAATAGATACACATGCAGATGTGTTTTATGTGTTgtatgtttaacagtttttttttttttttatcaaactctaaaataaaaatagtttaccCACAAATAAGATTTACTCACAAATTACTACCCCTCAAGCGGTTACTAATCTATgaattttctgttgaacacgaaagaaaatattttgaagaatcaaGCTGGTAATCAAGCATTAATATCCATAGTAAATGGGACTGCTATGGTAGTCACTAGCTACAgctttccaacattattcaattgagctttttgtgttcaactggaCAGACAAaaagtaaagtgtgagtaaatgattgaTTTTGTTTGCGGATGAAATCTTAATTACGTGATTTTAGATTTCTTTTATACTTCTGTTTGTACTACTAAATTTCAATATGCTTGTAAATATTGATGCAGGTCATTGAGAGGCTCAGGGCAATAAAAACACATGTACTTGTCATTTCTGATGTGAATAAATGGATTTCTCTTGG
>TCONS_00000947
TTGAAGggcatttttgttcattttggtgCTATTTTTCTCTTTAGACCTCTTCAATATACAATCTGAGTCCACATACACAGTCCAAGCTAATTTCTAGAGTGTAAAACTGTACAAAGTTTTATAATGGacacatactgtagtattaaatattaaaaggcaTTTAAAAAGACACTAATTTAATTAAAGCTTTAGGTTGGATAATCTGAATTTAAACCATATCTGCTATTGTGTCTAAATCTTTAAAATCAGGTACGCTAAGTATTTTAAAATGGAGAACGGAACTGAGTATCGCACTCTGCTGAAAGCCTACGCCATCAGATTTGATGTGCTGGTCAATGGAGATGCAGGAAAATTTGACATGATCCCAACTCTAATCAACATGGTGGCTGCTTTCACCTCTGTTGGTGTGGGTACAGTGCTTTGCGATATCATTTTGCTGAACTTCTTGAAAGGAGCAGACCAATATAAGGCCAAGAAATTTGAAGagGTGTCAGATTCAAATATTCAAAGCTCTGGTTCACTGTACAGGACCAGAGACCACAGCCAGCAGTCCATCAAAACCGACGAGAAGTTCTCCAACGACTCCGGCGCCTTTTCCATCGAACGTTACAGCTAATAATGCTAATCACAGGATTGAAATGAGTCGATTTGTAACATTATCATTTCTTCATCAAGTCATCGCACTTAATAATCTTTGTCATTGTCATTAATGATTTAGCATTATTTTGAACTAACCCTTAAACTTTACACACAAAACAG

Function

symbol description
p2rx3b Enables extracellularly ATP-gated cation channel activity. Acts upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be integral component of nuclear inner membrane. Is expressed in Rohon-Beard neurons; cranial ganglion; and trigeminal ganglion. Orthologous to human P2RX3 (purinergic receptor P2X 3).

GO:

id name namespace
GO:0033198 response to ATP biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005639 integral component of nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004931 extracellularly ATP-gated cation channel activity molecular_function
GO:0001614 purinergic nucleotide receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030319-3 Enables extracellularly ATP-gated cation channel activity. Acts upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be integral component of nuclear inner membrane. Is expressed in Rohon-Beard neurons; cranial ganglion; and trigeminal ganglion. Orthologous to human P2RX3 (purinergic receptor P2X 3).

Ensembl:

ensembl_id ENSDARG00000029718

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000946 False 2930 mRNA 0.37 12 44746154 44758388
TCONS_00000947 True 759 lncRNA 0.37 4 44753977 44757011

Neighbor

gene id symbol gene type direction distance location
XLOC_000546 ssrp1b coding upstream 8223 44710955 ~ 44737931 (+)
XLOC_000545 NA coding upstream 92186 44647908 ~ 44653968 (+)
XLOC_000543 med19b coding upstream 154665 44582369 ~ 44591489 (+)
XLOC_000544 BX511158.1 coding upstream 155773 44590267 ~ 44590381 (+)
XLOC_000542 NA coding upstream 175285 44567513 ~ 44570869 (+)
XLOC_000548 si:dkey-9i23.4 coding downstream 9269 44767657 ~ 44770055 (+)
XLOC_000549 si:dkey-9i23.5 coding downstream 22461 44780849 ~ 44783558 (+)
XLOC_000550 tmem187 coding downstream 41910 44800298 ~ 44801179 (+)
XLOC_000551 ndufs8a coding downstream 55934 44814322 ~ 44823071 (+)
XLOC_000552 NA coding downstream 67932 44826320 ~ 44835738 (+)
XLOC_000541 NA non-coding upstream 179721 44523368 ~ 44566433 (+)
XLOC_000540 BX908740.1 non-coding upstream 238901 44507134 ~ 44507253 (+)
XLOC_000557 CU929294.2 non-coding downstream 210074 44968462 ~ 44972926 (+)
XLOC_000558 CU929294.1 non-coding downstream 225437 44983825 ~ 44997770 (+)
XLOC_000563 AL953855.1 non-coding downstream 411658 45170046 ~ 45170652 (+)
XLOC_000567 NA non-coding downstream 625216 45383604 ~ 45398821 (+)

Expression


Co-expression Network