XLOC_000543 (med19b)


Basic Information

Item Value
gene id XLOC_000543
gene name med19b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44582369 ~ 44591489 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000939
AGACAGAACGTTACGGACGTTAAGTAATTGTCAACCGAATACAAACGTCCATACAATTAAACCGTCGCAGGCTCGCAGCGTAGTTTTTGTCATCATGACAGAAATCTTCTCCTCGTTGTATGGCCAGCCTGATTCCCAGGGCCCCGCAGGACCGTCCGCGCTGGGCTTTGGCTCTGGGAAACCTCAGGTCCCCCAAAACATGGGCCCGATGTGTTTCCCGCATCAGATGATGGAAGAAGGGGCTCCGGTCAGAAAACCGGCTGCGATGAACGAGCCCTTCTATCTGCTGAGAGAACTGCCCATGGAAAATGAGCTGACGGGACACACTAATCTCATCACGCACTACAACCTGGAGCACGCGTACAACAAGTTCTGTGGGAAGAAGGTGAAGGAGAAACTCAGCAACTTTCTTCCTGAGCTTCCTGGTATGATAGACAGCCCAGGCATTCAGGACAACAGTTCTCTGCGCTCTCTCATCGAGAAGCCTCCTGTGTGCAACAACTCTTTCAGTCCTCTGACCGGAGCCATGCTCACCGGCTTCAGGTTACACACTGGCCCTTTACCAGAGCAGTACAGACTGATGCACATTCAGCCGCCTAAGAAGAAGAacaaacacaagcacaaacaCCATCGACCTCAGGACCCCTTACCACCAGAAACTCCGTCAGATTCAGAccataagaagaagaagaaaaagaaggacGATGACCCGgacagaaagaaaaagaagaaagataagaaaaagaagaagAATCGCCACAGCCCTGATCACCCAGGCATGACCGGAGCTCAGCCCAGCACCAGCAGTTTGAGATAAAACTGAAAAACAAGAGGAAAGTGTTACAGTGAAGCACAAGCTGGACAATTGGGCTTTTTACCGGATGTCCCACAATTGATGTTACAGTAAGAATCAGATgccaggtttgtgtgtgtgtgtgtgtgtgtattgattacgtaatgtattaattaccagaTGATCTGGTAAAGCGTTATATTTGTAAGTGCCTCAGTGTCTATTTATGAGTTCAatgaaaaatgtaacatttttcatTCAGcttttttaaacgtttttttgttttttgtttttacaaataaaacaatcaGCTGAGAAACTGGCT
>TCONS_00000940
AGACAGAACGTTACGGACGTTAAGTAATTGTCAACCGAATACAAACGTCCATACAATTAAACCGTCGCAGGCTCGCAGCGTAGTTTTTGTCATCATGACAGAAATCTTCTCCTCGTTGTATGGCCAGCCTGATTCCCAGGGCCCCGCAGGACCGTCCGCGCTGGGCTTTGGCTCTGGGAAACCTCAGGTCCCCCAAAACATGGGCCCGATGTGTTTCCCGCATCAGATGATGGAAGAAGGGGCTCCGGTCAGAAAACCGGCTGCGATGAACGAGCCCTTCTATCTGCTGAGAGAACTGCCCATGGAAAATGAGCTGACGGGACACACTAATCTCATCACGCACTACAACCTGGAGCACGCGTACAACAAGTTCTGTGGGAAGAAGGTGAAGGAGAAACTCAGCAACTTTCTTCCTGAGCTTCCTGGTATGATAGACAGCCCAGGCATTCAGGACAACAGTTCTCTGCGCTCTCTCATCGAGAAGCCTCCTGTGTGCAACAACTCTTTCAGTCCTCTGACCGGAGCCATGCTCACCGGCTTCAGGTTACACACTGGCCCTaATCTGCTGGGattttttgtgtatgttttatcTGACTCTATGTCTGTCTTGCTGAAGTTACCAGAGCAGTACAGACTGATGCACATTCAGCCGCCTAAGAAGAAGAacaaacacaagcacaaacaCCATCGACCTCAGGACCCCTTACCACCAGAAACTCCGTCAGATTCAGAccataagaagaagaagaaaaagaaggacGATGACCCGgacagaaagaaaaagaagaaagataagaaaaagaagaagAATCGCCACAGCCCTGATCACCCAGGCATGACCGGAGCTCAGCCCAGCACCAGCAGTTTGAGATAAAACTGAAAAACAAGAGGAAAGTGTTACAGTGAAGCACAAGCTGGACAATTGGGCTTTTTACCGGATGTCCCACAATTGATGTTACAGTAAGAATCAGATgccaggtttgtgtgtgtgtgtgtgtgtgtattgattacgtaatgtattaattaccagaTGATCTGGTAAAGCGTTATATTTGTAAGTGCCTCAGTGTCTATTTATGAGTTCAatgaaaaatgtaacatttttcatTCAGcttttttaaacgtttttttgttttttgtttttacaaataaaacaatcaGCTGAGAAACTGGCTAA

Function

symbol description
med19b Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED19 (mediator complex subunit 19).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040727-4 Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED19 (mediator complex subunit 19).

Ensembl:

ensembl_id ENSDARG00000009472

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000939 False 1118 mRNA 0.46 6 44582369 44591487
TCONS_00000940 True 1177 mRNA 0.46 6 44582369 44591489

Neighbor

gene id symbol gene type direction distance location
XLOC_000542 NA coding upstream 11500 44567513 ~ 44570869 (+)
XLOC_000541 NA coding upstream 15936 44523368 ~ 44566433 (+)
XLOC_000540 BX908740.1 coding upstream 75116 44507134 ~ 44507253 (+)
XLOC_000539 rtn4rl2a coding upstream 86467 44491077 ~ 44495902 (+)
XLOC_000538 crybb1l2 coding upstream 133982 44439661 ~ 44448387 (+)
XLOC_000545 NA coding downstream 56419 44647908 ~ 44653968 (+)
XLOC_000546 ssrp1b coding downstream 119466 44710955 ~ 44737931 (+)
XLOC_000547 p2rx3b coding downstream 154665 44746154 ~ 44758388 (+)
XLOC_000548 si:dkey-9i23.4 coding downstream 176168 44767657 ~ 44770055 (+)
XLOC_000549 si:dkey-9i23.5 coding downstream 189360 44780849 ~ 44783558 (+)
XLOC_000521 NA non-coding upstream 490824 44090971 ~ 44091545 (+)
XLOC_000520 NA non-coding upstream 515885 44066244 ~ 44066484 (+)
XLOC_000552 NA non-coding downstream 234831 44826320 ~ 44835738 (+)
XLOC_000557 CU929294.2 non-coding downstream 376973 44968462 ~ 44972926 (+)
XLOC_000558 CU929294.1 non-coding downstream 392336 44983825 ~ 44997770 (+)
XLOC_000563 AL953855.1 non-coding downstream 578557 45170046 ~ 45170652 (+)

Expression


Co-expression Network