Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000947 |
| length | 759 |
| lncRNA type | retained_intron |
| GC content | 0.37 |
| exon number | 4 |
| gene id | XLOC_000547 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 44746154 ~ 44758388 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0033198 | response to ATP | biological_process |
| GO:0098655 | cation transmembrane transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006812 | cation transport | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0005639 | integral component of nuclear inner membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0004931 | extracellularly ATP-gated cation channel activity | molecular_function |
| GO:0001614 | purinergic nucleotide receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030319-3 | Enables extracellularly ATP-gated cation channel activity. Acts upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be integral component of nuclear inner membrane. Is expressed in Rohon-Beard neurons; cranial ganglion; and trigeminal ganglion. Orthologous to human P2RX3 (purinergic receptor P2X 3). |
| ensembl_id | ENSDART00000148758 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003121 | lncRNA | upstream | 100009 | 44647908 ~ 44653968 (+) | True | XLOC_000545 |
| TCONS_00003120 | lncRNA | upstream | 183108 | 44567513 ~ 44570869 (+) | True | XLOC_000542 |
| TCONS_00003119 | lncRNA | upstream | 213839 | 44523368 ~ 44540138 (+) | False | XLOC_000541 |
| TCONS_00000912 | lncRNA | upstream | 528685 | 44222519 ~ 44225292 (+) | True | XLOC_000523 |
| TCONS_00000904 | lncRNA | upstream | 614576 | 44135843 ~ 44139401 (+) | True | XLOC_000522 |
| TCONS_00000954 | lncRNA | downstream | 69309 | 44826320 ~ 44835738 (+) | False | XLOC_000552 |
| TCONS_00000962 | lncRNA | downstream | 156825 | 44913836 ~ 44914405 (+) | False | XLOC_000554 |
| TCONS_00000965 | lncRNA | downstream | 184621 | 44941632 ~ 44942285 (+) | True | XLOC_000555 |
| TCONS_00000968 | lncRNA | downstream | 211451 | 44968462 ~ 44971240 (+) | False | XLOC_000557 |
| TCONS_00000969 | lncRNA | downstream | 213558 | 44970569 ~ 44972926 (+) | True | XLOC_000557 |
| TCONS_00000942 | mRNA | upstream | 16046 | 44710955 ~ 44737931 (+) | False | XLOC_000546 |
| TCONS_00000945 | mRNA | upstream | 16465 | 44711446 ~ 44737512 (+) | False | XLOC_000546 |
| TCONS_00000944 | mRNA | upstream | 16465 | 44711446 ~ 44737512 (+) | True | XLOC_000546 |
| TCONS_00000943 | mRNA | upstream | 23610 | 44710975 ~ 44730367 (+) | False | XLOC_000546 |
| TCONS_00000940 | mRNA | upstream | 162488 | 44582369 ~ 44591489 (+) | True | XLOC_000543 |
| TCONS_00000948 | mRNA | downstream | 10646 | 44767657 ~ 44770054 (+) | False | XLOC_000548 |
| TCONS_00000950 | mRNA | downstream | 23838 | 44780849 ~ 44783558 (+) | True | XLOC_000549 |
| TCONS_00000951 | mRNA | downstream | 43287 | 44800298 ~ 44801179 (+) | False | XLOC_000550 |
| TCONS_00000952 | mRNA | downstream | 43381 | 44800392 ~ 44801162 (+) | True | XLOC_000550 |
| TCONS_00000953 | mRNA | downstream | 57311 | 44814322 ~ 44823071 (+) | True | XLOC_000551 |
| TCONS_00000941 | other | upstream | 163596 | 44590267 ~ 44590381 (+) | True | XLOC_000544 |
| TCONS_00000938 | other | upstream | 188631 | 44559451 ~ 44565346 (+) | True | XLOC_000541 |
| TCONS_00000933 | other | upstream | 246724 | 44507134 ~ 44507253 (+) | True | XLOC_000540 |
| TCONS_00000911 | other | upstream | 526523 | 44222222 ~ 44227454 (+) | False | XLOC_000523 |
| TCONS_00000895 | other | upstream | 1488736 | 43265123 ~ 43265241 (+) | True | XLOC_000510 |
| TCONS_00000949 | other | downstream | 12023 | 44769034 ~ 44770055 (+) | True | XLOC_000548 |
| TCONS_00000970 | other | downstream | 226814 | 44983825 ~ 44989546 (+) | False | XLOC_000558 |
| TCONS_00000971 | other | downstream | 229985 | 44986996 ~ 44997770 (+) | False | XLOC_000558 |
| TCONS_00000975 | other | downstream | 250392 | 45007403 ~ 45009616 (+) | True | XLOC_000559 |
| TCONS_00000982 | other | downstream | 413035 | 45170046 ~ 45170652 (+) | True | XLOC_000563 |
