Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003119 |
| length | 1477 |
| lncRNA type | sense_over |
| GC content | 0.45 |
| exon number | 2 |
| gene id | XLOC_000541 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 44523368 ~ 44566433 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005669 | transcription factor TFIID complex | cellular_component |
| GO:0033596 | TSC1-TSC2 complex | cellular_component |
| GO:0016251 | RNA polymerase II general transcription initiation factor activity | molecular_function |
| GO:0140223 | general transcription initiation factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000912 | lncRNA | upstream | 298076 | 44222519 ~ 44225292 (+) | True | XLOC_000523 |
| TCONS_00000904 | lncRNA | upstream | 383967 | 44135843 ~ 44139401 (+) | True | XLOC_000522 |
| TCONS_00002867 | lncRNA | upstream | 431823 | 44090971 ~ 44091545 (+) | True | XLOC_000521 |
| TCONS_00002866 | lncRNA | upstream | 456884 | 44066244 ~ 44066484 (+) | True | XLOC_000520 |
| TCONS_00003117 | lncRNA | upstream | 483247 | 44017044 ~ 44040121 (+) | False | XLOC_000517 |
| TCONS_00003120 | lncRNA | downstream | 27375 | 44567513 ~ 44570869 (+) | True | XLOC_000542 |
| TCONS_00003121 | lncRNA | downstream | 107770 | 44647908 ~ 44653968 (+) | True | XLOC_000545 |
| TCONS_00000947 | lncRNA | downstream | 213839 | 44753977 ~ 44757011 (+) | True | XLOC_000547 |
| TCONS_00000954 | lncRNA | downstream | 286182 | 44826320 ~ 44835738 (+) | False | XLOC_000552 |
| TCONS_00000962 | lncRNA | downstream | 373698 | 44913836 ~ 44914405 (+) | False | XLOC_000554 |
| TCONS_00000932 | mRNA | upstream | 27466 | 44491898 ~ 44495902 (+) | True | XLOC_000539 |
| TCONS_00000931 | mRNA | upstream | 29820 | 44491077 ~ 44493548 (+) | False | XLOC_000539 |
| TCONS_00000930 | mRNA | upstream | 74981 | 44442140 ~ 44448387 (+) | True | XLOC_000538 |
| TCONS_00000929 | mRNA | upstream | 76451 | 44439661 ~ 44446917 (+) | False | XLOC_000538 |
| TCONS_00000926 | mRNA | upstream | 105143 | 44395976 ~ 44418225 (+) | False | XLOC_000537 |
| TCONS_00000935 | mRNA | downstream | 155 | 44540293 ~ 44566432 (+) | False | XLOC_000541 |
| TCONS_00000936 | mRNA | downstream | 275 | 44540413 ~ 44565055 (+) | False | XLOC_000541 |
| TCONS_00000937 | mRNA | downstream | 13967 | 44554105 ~ 44559562 (+) | False | XLOC_000541 |
| TCONS_00000939 | mRNA | downstream | 42231 | 44582369 ~ 44591487 (+) | False | XLOC_000543 |
| TCONS_00000940 | mRNA | downstream | 42231 | 44582369 ~ 44591489 (+) | True | XLOC_000543 |
| TCONS_00000933 | other | upstream | 16115 | 44507134 ~ 44507253 (+) | True | XLOC_000540 |
| TCONS_00000911 | other | upstream | 295914 | 44222222 ~ 44227454 (+) | False | XLOC_000523 |
| TCONS_00000895 | other | upstream | 1258127 | 43265123 ~ 43265241 (+) | True | XLOC_000510 |
| TCONS_00000894 | other | upstream | 1298777 | 43224477 ~ 43224591 (+) | True | XLOC_000509 |
| TCONS_00000892 | other | upstream | 1487728 | 42850198 ~ 43035640 (+) | False | XLOC_000507 |
| TCONS_00000938 | other | downstream | 19313 | 44559451 ~ 44565346 (+) | True | XLOC_000541 |
| TCONS_00000941 | other | downstream | 50129 | 44590267 ~ 44590381 (+) | True | XLOC_000544 |
| TCONS_00000949 | other | downstream | 228896 | 44769034 ~ 44770055 (+) | True | XLOC_000548 |
| TCONS_00000970 | other | downstream | 443687 | 44983825 ~ 44989546 (+) | False | XLOC_000558 |
| TCONS_00000971 | other | downstream | 446858 | 44986996 ~ 44997770 (+) | False | XLOC_000558 |
