RNA id: TCONS_00000935


Basic Information

Item Value
RNA id TCONS_00000935
length 4062
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_000541
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44523368 ~ 44566433 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACATTTCTCAGATTCTTTGTTGAATTTTTAAGCACGTCTGATTGATTTgacactttgttttgtttttttaaatgtttccaaaGCATTGCCCATAGTGGCAGGTTGTCATCAGTTCATAAGCGTTTTAAGTGAGCtttttaaatgaccaaaacatgaTATTTATACTTGACCAACTACATTCATGTTTAGTGATTGACTTTTAATATTCTATAAGCCAGATGATCTAATTATCAGCCTCTTTCACCACTTTGTATTTTCTTTCGTCATTTAATATCACTTTTTTGAGGACTATTTGTTTCGCCATTGATGCCCGGCGATGCTCATCTTGTGGCCTTTTTTAAAATGCTGAAGGGACAGCAACTCCTCCCTTAGTCTTTCTTTGGTTTGTGCTGTCCTGACAACACAAACGCATTCCCTAACGGATATATTTCCATCCTGCCCCCTGGGTGATGCCGAGCGGCAGTATGAGTGGGGGCGTCTCTGGACCCACTTCCCCACCCCATCCCACCGTCCCATCCAGACCTCTCCGGCCTAGTCGCTACGTGCCAGTCTCTGCGGCAACGGCCTTCCTGGTTGGCTCAACCACGCTCTTCTTCTGCTTCACGTGCCCTTGGCTTTCGGAGCAGTTTTCTGTTGCTGTGCCAATATACAATGGCgttatgtttatgtttgttctGGCCAACTTCTGTATGGCCACCTTTATGGATCCTGGCATCTTTCCCAGAGcTGAGGAGGACGAGGATAAAGAGGATGATTTTCGGGCTCCCCTCTATAAGACCGTGGAGATTCGTGGCATTCAAGTGCGGATGAAGTGGTGCTCCACCTGCCGTTTCTACAGACCCCCGCGGTGCTCACACTGCTCTGTGTGTGACAACTGTGTTGAGGATTTCGATCATCACTGTCCGTGGGTGAACAACTGTATCGGCCGGAGGAACTACCGTTACTTCTTCCTGTTCCTGCTTTCTTTGACAGCTCACATAATGGGGGTGTTTGGCTTCGGCCTTCTCTTCATTCTCTACCACACCCAGCAGCTGGACAGAGTGCATTCGGCCGTAACTATGGCCGTCATGTGTGTTGCTGGGCTTTTTTTCATCCCAGTAGCAGGCCTCACTGGTTTCCATGTGGTTCTGGTGGCAAGAGGCAGAACCACCAACGAGCAGGTGACAGGAAAGTTTAGGGGAGGTGTAAACCCCTTCACAAATGGCTGCTTGAGGAACGTTTCGCATGTTCTCTGCAGCTCCCAGGCACCCAGGTATCTGGGTAGAAAGAGGAAGGCTCAGACTGTGTCTGTTCAGCCTCCTTTCCTCAGACCGCAGCTTACCGAGGCTCAACTTGCAGCTAAGGTACTTGACAACGGAATCCAGGGAGACCTGCACCGGTCTAAGAGCAGTTTGGAGATGATGGAGAGTCAGTCTGCTGATGCCGAGCCTCCGCCTCCACCTAAACCGGAGCTCAGATACCCGGGATTGTCACGAGGACCTGCCGGACACTCTGAGGaGAGTAGTCTGTTGAATAAAGCTCCACCCACCCCCACCATGTTCAAATACAGGCCTACATACAGCAGTCCGGGCAAGAATCACACTGCCCTCACTCATGCCTATGCCAATCAGTCCAGTCAGCAGCCCGGCTATCGCTCTGAGCCCAGTCTGGATGGGCGCGAGGGGGGAGGAGCAGAGCGAAGCGGGGCCGAGCGAACAGGTGGGGGCCCTGGAGGACCTCCAGGCTCAGGAATCCCAGGCTACTCCCTAGGAGGTCGCTCATATCCCTCCTTTTCTGATCCTACAGTGCTCGCCGAAAGAGCCTCGCGCTCCTCCAGCGTTCGCTCCACACACAACGCCCCGCCATCCGAAGCCACCACCTCCACCAGCTACAAGAGCTTAGCCAATCAGACTCCGCCGCAGGCTGCGAGGAACGGTAGCCTGTCCTACGATAGTCTCCTCACACCTTCCGAAAGCCCCGATTTTGAATCGGCAGCACCAGAGATGTCTCCGGGTCGCCCACGAACGCCTGTAGTTGGATATAGCTCCCCCTTCCTGTCAGCACAAATTGCCCATCAGAGGGAGGCAGAGCTCCACCAGCCGGTGGCCTCTAGCTCCGCCCTCATGGCCTCTCCTCAGCATGCAGTGTTTCTCCGTGGTTCCGGTTCTCCACCCGTTCCCCCTGAGCGCGAGCGGGAGCGCCTGCTGCACGATTCGCAAGCTCAgcaccatcaccaccaccaccatcatcaccaccaccatcGGCCGCCCCGCTTCTCTCGACCCCCTCTGCTCTCTGACTCGGGCCCCCCTCAGCCTTCATACCCCTACCGCACCCGCTCCACCGACACCACCCACCCGCCACGCTCGCCGCACCCCCCGCCGCTGGGCAAGTCTCTGTCGTACTCTAGCGCTGCCGCTGCAGAGATGCAGTACCGCCTGGTCCGCAAAGCCTCGGCCTCGGTTGCGGGAGGGGGCATTCAGGCGCCAAAGGACGAGATTCAGATGAAGTCGTATAGTCGGACAAACGGGCAGCCAAAGCCTTCTTCCACCCCCTCATCCCCCACTCATCCCATCAGCGTGTCCACTCGCCCAGGCCAGGCACATTCCAGTGCCGGCTCTTCCCAGAGTCCCGCGCACAAGCCTGGAGGTGGCGTGAAGAAGGTGACCGGTGTCGGAGGGACCACTTACGAGATCTCCGTGTGACAGACGAGCCACAGACTCATTTCTTCACCATAGCAgagaaaagaataataataactgcGCACCAGACTTTTATTGGTGGCCGTGCAAATGTTAGGAAATCATTGCTGACCAGCAGGTATTGGTTGGATTTGAcatggaggaagaggaggaggaggaagagcagggagctactcattcattcattcaccgtcACGTGATCGGACTTCAAGACTTACACATAAGGAGCTGGAAGACCAAGTCAACGTGACGGCAAAGGACCGGATTGCCTTCAAAACATTTCAagtacataagaaaaaaaaaggaagagaTTTTTATCTGACGTAAATGTGTAAATTGTTCTGTATAGAGAAAAAAATGGtcgctgtttttgttttgttttcaaagagTGGAATTTGATTTTTACCAAAAGGGGACCTGTGGCATCCAGTAGCCGTTTCAGACCACTGTGATTGGCATGCGACAATGTTGCGTCCGTATCCAATCAGCGCTAGGGAAGCAAAACGCTAGGAAAATAAGAAagcaaatgcattatttaaatgacCGCAGCCTTTTCAAATCTAGTGTTTTCAGAGCAATGGCCTTGGAAATTCAAGGAGGAAacgtgtttttatttaatttttaaagtgttattttatatGACTTTATAAATAGTTATTGATAAGATcaaacaatgtttttgtttttctacaaAGGCTGATATTTGTTCTCGATGGGCTTTTATCTAATCATATAGATGGATGAAGAACTGTTGGTCGCTCTAAAAACGAAAGTTgctcataacacacacacactccaaaaaaaataattatttgacaTGGAGGAGCCCCATCTTTGGCTCGTATTTCAAATTGTATCTTGTAGACATTGATTGTCTGCCTCTTaggctatttctttttttaatacatgAGGGGCAAATCTCATCAGTGGCCTTGACTAGCCAGCCATGTAGGATTTACACCACCAGGATGCTGGAGACCATATCAGTGCCCTCTGATTGGACGACAGTTCAGCCAATCAGTGGACGTTAGCTGTCGAATCAGAAAgccttttattattaatattattatttaatgcttaCCTATCACTTTTAGAAAAAGATTGTGACATTTTGCCGTCATTTCAATCATCGTCTGTCTCGTCTTTTAGATCAGGGCTGGCCAATCAGGGGACAgaagatttaattttatttgtgagcAGTTCAttcataggattttttttttcttttttggatcaCAAAGATTAACTGaggggaaagaaagaaagagaagaaagTGTACTGTATAGTTCAGTGTGAGTGAACATGGTTGTGAATATGTgtatgcgcgcgtgtgtgtgtgtgtgtgtgtttgagcattGGTAATAAActctttataaatg

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0140223 general transcription initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-090312-92 Predicted to enable palmitoyltransferase activity. Predicted to be involved in protein palmitoylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human ZDHHC5 (zinc finger DHHC-type palmitoyltransferase 5).

Ensembl:

ensembl_id ENSDART00000003497

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003119 lncRNA upstream 155 44523368 ~ 44540138 (+) False XLOC_000541
TCONS_00000912 lncRNA upstream 315001 44222519 ~ 44225292 (+) True XLOC_000523
TCONS_00000904 lncRNA upstream 400892 44135843 ~ 44139401 (+) True XLOC_000522
TCONS_00002867 lncRNA upstream 448748 44090971 ~ 44091545 (+) True XLOC_000521
TCONS_00002866 lncRNA upstream 473809 44066244 ~ 44066484 (+) True XLOC_000520
TCONS_00003120 lncRNA downstream 1081 44567513 ~ 44570869 (+) True XLOC_000542
TCONS_00003121 lncRNA downstream 81476 44647908 ~ 44653968 (+) True XLOC_000545
TCONS_00000947 lncRNA downstream 187545 44753977 ~ 44757011 (+) True XLOC_000547
TCONS_00000954 lncRNA downstream 259888 44826320 ~ 44835738 (+) False XLOC_000552
TCONS_00000962 lncRNA downstream 347404 44913836 ~ 44914405 (+) False XLOC_000554
TCONS_00000932 mRNA upstream 44391 44491898 ~ 44495902 (+) True XLOC_000539
TCONS_00000931 mRNA upstream 46745 44491077 ~ 44493548 (+) False XLOC_000539
TCONS_00000930 mRNA upstream 91906 44442140 ~ 44448387 (+) True XLOC_000538
TCONS_00000929 mRNA upstream 93376 44439661 ~ 44446917 (+) False XLOC_000538
TCONS_00000928 mRNA upstream 122137 44396048 ~ 44418156 (+) True XLOC_000537
TCONS_00000939 mRNA downstream 15937 44582369 ~ 44591487 (+) False XLOC_000543
TCONS_00000940 mRNA downstream 15937 44582369 ~ 44591489 (+) True XLOC_000543
TCONS_00000942 mRNA downstream 144523 44710955 ~ 44737931 (+) False XLOC_000546
TCONS_00000943 mRNA downstream 144543 44710975 ~ 44730367 (+) False XLOC_000546
TCONS_00000945 mRNA downstream 145014 44711446 ~ 44737512 (+) False XLOC_000546
TCONS_00000933 other upstream 33040 44507134 ~ 44507253 (+) True XLOC_000540
TCONS_00000911 other upstream 312839 44222222 ~ 44227454 (+) False XLOC_000523
TCONS_00000895 other upstream 1275052 43265123 ~ 43265241 (+) True XLOC_000510
TCONS_00000894 other upstream 1315702 43224477 ~ 43224591 (+) True XLOC_000509
TCONS_00000892 other upstream 1504653 42850198 ~ 43035640 (+) False XLOC_000507
TCONS_00000941 other downstream 23835 44590267 ~ 44590381 (+) True XLOC_000544
TCONS_00000949 other downstream 202602 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00000970 other downstream 417393 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00000971 other downstream 420564 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000975 other downstream 440971 45007403 ~ 45009616 (+) True XLOC_000559

Expression Profile

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