RNA id: TCONS_00000930


Basic Information

Item Value
RNA id TCONS_00000930
length 2645
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_000538
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44439661 ~ 44448387 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCATCATGTCCACTGGTGGAGAGAAGTCCAAGCCTGCCTCCCAGCCTGATGGGAAGGCTGCTCAGACCCAGAAGAAAACCGAGATGGGCATGGGAAACTACAAGATGTACGTGTTTGATCAGGAGAACTTCCAGGGCCGCATGATTGAGATCTCCAACGAGTGCATGAACGTGTGTGAAATGGGCATGGATAGAGTGCGTTCCCTCCGCGTGGAGTGCGGCCCttgGGTTGGCTGGGAGCAGATGAACTTCTGTGGAGAGATGTACATCCTGGAGAAGGGTGAATATCCCCGCTGGGACTGCTGGAGCAACTGCCACAGAAACGACTATCTGCTGTCCTTCAGACCTATCAGAATGGACCCAGAAAAGCATAAGATCTGTCTGTACGAAGTTGGCGATTTCAAGGGCCGCAAGATGGAGATTATCGATGATGACGTGCCCAGCATGTACACCTTCGGCTTCACCGACCGTGTTGGCAGCATCATGGTCAGCTGTGGCACTTGGGTGGGCTACCAGTATCCTGGTTACCGTGGCAGCCAGTACCTGCTGGAGAAGGGCGACTATCGTCACTTTAACGAGTACGGCGCTCGCCATCCCCAGTTCCAGTCCGTCAGGCGCATCCGGGACATGCAGTGGCACCCAGACGGCTGCTACACCATGGCCACCAAGTGAGGGCTGGGGAGGACGAGAAAGAGAGGGAAcaggggagagagaaagagaggagggGGAGAAGATGAAGCAGGGGGAGGGGGGAGGGCCAAGAAGGAGAGGAGGGGCGCACCGCCCGTATGAGTCATCCTGGACCAGAAACGGATGAAGGTCAGTCTGGTGCGGGCAGCGTGTATATCAGATGACTGTATGGCTTTTTCTTTCCCACCtctttattttctctctctctaactCTTCACCTTTTCTCCCATCTTTTTCTTTCTTccctcttcctcctcttcctcatcctCCATGCACTTTTCCCCTGAGGAAATCAGTCCATCACAATGAGCCTTAACTGATGGCTGACTCGTCTGGGTCagggatgattgattgattgattgacagggGTGGGTTGGGGACCGGGCTGTGGGTGGCAGAGGAACGGGTGTTTTTGGCCAATAGGCCGTGTAAAACCTCCACATCCTTTTTGAACGGTAATAAAAGCGACTCTTGTGACCACTGTTATCCCCGCTGTCTATCTGTGTCCATGTACGCATTCACCACACACTGTGAATATATCAGGTTTCTctaatcaaaacatttcaaaGCTAGATTTTCTTTCAATCAAAGCAAAAGCACAATGTCAAAAGCAAACATTAATCATTTGTTATACTGCAACTTAGTGAAACCAAGATGCTAAACTGCAGAACAAGTAGATGCAAGATGCAAGCACATTCTGAGCACACTGATataacaaaattggccatagtgtatgtgtgttaatgtaaaagtgcatgggtgtttcccagtactgggttgcagctggaagggcatccgctgtgtaaaacatgctggataagttggcggttcattacgctgtcacgacccctgataaatatgaactaagccaaagcaaaaaaaatgaagatcggttttgaccatatttggaatagtcatgaataataatgagctctgctctgatgcTCTGCAGCTGGTGTCAGTACCTGCTGTTACACACACAGTGTGGTGTACTCtgaaatacacacatgcaaaataatcatGCTTCATTTGacacaaaatatattaataaattaagaaGATGGGTTTGTTGCAAACAGACACGgtaaatttcacaatataaacGTGAATCTAAAACATGATATGATTAAACAGACCTTATCATACCTCTTCAGGGTGATGCTGAATACTTTTATTATCCACATATCCCACATTTTGCATTCTGACgagctgtaaacatgtttatgaATGGATGCCTGCTTCACGAACCTGATTACTattccttaaagggccatgaaacccccctgtttcagcatacagaatacacgctaagatctcatggccgtgactcagcttcaaaaattagtttcaaaccggaagtatgaatttgctcgaaataacgcaaaaacatccaattttcacttttgtgaaatatatgtgttgtaatagtgtttttagcatcatgggacacatatacaactgtcaacagctcaaaaaatgtgttttggtgttttgtgaccctttaaagcctgtcctgttttcaaaataaaagtctcacatACATAGTACATTTAATACAATCTTAGATCAACTTAAAATGAAGTGAAACGTGCATATTAACGGTGACCACTGTTATCCCAGCTGTGTATCTGTGTCCATGTGTGCATTCACCACACACTGTGAATATATCAGGTTTctctaattaaaacatttcaaagctAGATTTTCTTTCAATCAAAACATAAGCACAATATCAAAAGCAAACATTAATCATTTGTTATACTGCAACTTAGTGAAACCAAGATGCTAAACTGCAGAACAAGTAGATGCAAGCACAGTCTGAGCACTGATCTGAGCACACTGATACAACAATGATGCCTAATTATGTTCAGGATGCTGCCATTGTGCAGACTAAAgataataatacattatcagaCAATATTTCATTTTCTCAAGCATTGTGTTAATgtaatggaa

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070822-18 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract and cataract 17 multiple types. Orthologous to human CRYBB1 (crystallin beta B1).

Ensembl:

ensembl_id ENSDART00000190592

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000912 lncRNA upstream 216848 44222519 ~ 44225292 (+) True XLOC_000523
TCONS_00000904 lncRNA upstream 302739 44135843 ~ 44139401 (+) True XLOC_000522
TCONS_00002867 lncRNA upstream 350595 44090971 ~ 44091545 (+) True XLOC_000521
TCONS_00002866 lncRNA upstream 375656 44066244 ~ 44066484 (+) True XLOC_000520
TCONS_00003118 lncRNA upstream 402019 44027490 ~ 44040121 (+) True XLOC_000517
TCONS_00003119 lncRNA downstream 74981 44523368 ~ 44540138 (+) False XLOC_000541
TCONS_00003120 lncRNA downstream 119126 44567513 ~ 44570869 (+) True XLOC_000542
TCONS_00003121 lncRNA downstream 199521 44647908 ~ 44653968 (+) True XLOC_000545
TCONS_00000947 lncRNA downstream 305590 44753977 ~ 44757011 (+) True XLOC_000547
TCONS_00000954 lncRNA downstream 377933 44826320 ~ 44835738 (+) False XLOC_000552
TCONS_00000926 mRNA upstream 23915 44395976 ~ 44418225 (+) False XLOC_000537
TCONS_00000928 mRNA upstream 23984 44396048 ~ 44418156 (+) True XLOC_000537
TCONS_00000927 mRNA upstream 24248 44395983 ~ 44417892 (+) False XLOC_000537
TCONS_00000925 mRNA upstream 47641 44390470 ~ 44394499 (+) True XLOC_000536
TCONS_00000924 mRNA upstream 78930 44360973 ~ 44363210 (+) True XLOC_000535
TCONS_00000931 mRNA downstream 42690 44491077 ~ 44493548 (+) False XLOC_000539
TCONS_00000932 mRNA downstream 43511 44491898 ~ 44495902 (+) True XLOC_000539
TCONS_00000934 mRNA downstream 75129 44523516 ~ 44566433 (+) False XLOC_000541
TCONS_00000935 mRNA downstream 91906 44540293 ~ 44566432 (+) False XLOC_000541
TCONS_00000936 mRNA downstream 92026 44540413 ~ 44565055 (+) False XLOC_000541
TCONS_00000911 other upstream 214686 44222222 ~ 44227454 (+) False XLOC_000523
TCONS_00000895 other upstream 1176899 43265123 ~ 43265241 (+) True XLOC_000510
TCONS_00000894 other upstream 1217549 43224477 ~ 43224591 (+) True XLOC_000509
TCONS_00000892 other upstream 1406500 42850198 ~ 43035640 (+) False XLOC_000507
TCONS_00000891 other upstream 1559083 42463298 ~ 42883057 (+) False XLOC_000507
TCONS_00000933 other downstream 58747 44507134 ~ 44507253 (+) True XLOC_000540
TCONS_00000938 other downstream 111064 44559451 ~ 44565346 (+) True XLOC_000541
TCONS_00000941 other downstream 141880 44590267 ~ 44590381 (+) True XLOC_000544
TCONS_00000949 other downstream 320647 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00000970 other downstream 535438 44983825 ~ 44989546 (+) False XLOC_000558

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018563 True 804 mRNA 0.63 6 CM030135.1 14321331 ~ 14328617 (-)