RNA id: TCONS_00000942


Basic Information

Item Value
RNA id TCONS_00000942
length 2621
RNA type mRNA
GC content 0.47
exon number 18
gene id XLOC_000546
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44710955 ~ 44737931 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAAGGCGTTCCTGCGCGCCGCACATCTACGCTCACGGGACTCGGCCTTGATCCTCTCGCCGAATAACAGTCCATTCTGTCTACTCTGACATGAGTGACACTTTGGAGTTCAATGAAATTTATCAGGAGGTCAAGGGCTCATGGAATGACGGCCGCCTGCGCTTCAGTAAGCAGACAGTGGTGTATAAAAACAGTAAGACCGGGAAGGTGGACACTATTCCGGTCCCTGAACTCACTCAGGCCCAGTGGAGGAGAGTCTGTCTGGGTCACGGCATCAAACTATGGACCAGCACTGGCCACATCTACAAATATGATGGCTTTAAAGACGCAGACCTTGAGAAGATCTCAGAATACTTCAAAGACAACTACAAAGTGGAGCTAACAGAGAAAGACATGTGTGTTAAGGGCTGGAATTGGGGCACTGCTAAATTTAATGGGCCGTTGCTTTCCTTTGACGTGAATGACAGCCCTACATTTGAGATTCCTCTCTCCAGTGTATCCCAGTGTACGACGGGTAAGAATGAGGTGACAGTGGAGTTTCATCAGAATGATGACACAGAGGTGTCTCTCATGGAGGTGCGCTTCTACGTCCCACCCACCACAGGGGACGAGGGTTCAGACCCGGTAGAGGCATTTGCTCAGAATGTGCTGTCGAAGGCAGATGTCATCCAGGCCACAGGAGATGCTGTTTGTATCTTCAGAGAGCTGCAGTGCCTCACGCCTAGGGGCagGTACGATATCCGTATTTATCCAACATTCCTTCATCTACACGGTAAGACATTTGACTACAAGATCCCGTACACCACAGTGCTCCGCCTCTTCCTGTTGCCTCATAAAGACCAGCGGCAAATGTTCTTCGTGATCAGTCTGGACCCCCCTATTAAACAGGGTCAAACACGCTATCACTTTCTCATTCTTCTGTTCTCCAAGGAAGAAACCATCAGCCTCACACTCAAcatgaatgaGGACGAGGTGGAGAGGCGTTTTGAaggaaaacttaataaaaacatgTCCGGCTCTCTCTATGAGATGGTCAGCAGGGTCATGAAAGCCTTGGTCAACAGGAAGATCACAGTGCCTGGAAATTTCCAAGGTCACTCAGGAGCTCAGTGTATAACCTGCTCCTATAAGGCCAGTTCAGGGCTGCTGTATCCCCTGGAAAGAGGTTTCATCTACGTGCACAAGCCCCCAGTGCACCTGCGTTTTGAGGAGATCGCCTGTGTGAACTTCGCCCGCGGGACCACCACGACCCGCTCCTTCGATTTCGAGATCGAGACCAAGCAAGGCAATCAGTACACCTTCAGCAGCATCGAGAGGGAGGAATATGGGAAGCTCTTCGACTTTGTCAATGCTAAGAAGCTAAGCATAAAGAACCGAGGCTTCAAAGAGGGTATGAAAGGTAACGATGACATGTACAGTGACTCTGACGAAGACCAGCACGATGCATATCTGGAGCGTATGAAAGAAGAGGGCAAGATCCGCGAAGAGGGCAATGACAGCGATGACTCGGAGGGCGAGAGTGATGAATCGTTTAATCCTGGTGAAGAAGATGAGGACATAGCAGAAGAGTATGACAGTAAGGCTTCTGCCAGTGAAAGCAGTGCTGAAgaaggagacagtgatgaagacCGCAAGAAGAAATCAGCTAAGAAGGTCAAATTTGTCAAGGAAAGAAAACCACGCAAGAAAGAGAAAAAGGTCAAAGACAGCGGCGCCCCCAAGAGGCCAATGAGTGCCTACATGCTCTGGCTTAACTCAAGCAGAGACCGCATTAAATCAGAGAATCCAGGCATCTCTATCACAGAAATCTCCAAAAAGGCCGGAGAAATGTGGAAACAACTTGGCAAAGACAAGAAagagGAGTGGGATGGAAAAGCAGAGGAAGCAAAGAAAGAGTACGATCGAGCAATGAGAGAGTATAGGGAGAGTGGCGGAGGCTCATCTGGCAGCTCCAAAAAGGAAAGGAAGAAGAAAAGAGGGAGGAATGAAGAAAAGAGGAAAAGGAAATCAGGGgctgggagagagaaagagaaggagcGATCTACAGGCAACGACAGCTTTAAGAGTCGAGAGTTCATATCCAGCGAAGAGAGCTCATCAGAGTCTGACAAAGGAAAGAAACGCAAGCGCAAGGGGTCtgataatgaaaaagaagaggAAGCGGTCAGCACTCCAGCCAGCTCAGAGTCCGGCTCAGACTGAAAGACACAGAAACAGGACAGTGGAACATAACCTTAACCTACTTTTTCACTACATTGTATTGCACATGACCTGATGAAATTCTTATTTTAGTCTATAATGCATCGTAACATGCTAAGATTCTGAAGTGTTTATACCTTTGGAAATGGTGATGTtcactttaaagggacagttcacccaaacattgtaattctgtcatttattgctAATCTAATGATCTAATATTGTGTTAAAGGAGACTGGAGCTGTCATGATTCAAGATtacttattttacagtacatcaaGGCTCAGAAGAACACaagggtaaactgtccctttaaaaatgcTGTGTATtcgttttacttttgcttttagtGTTGTCCGTGTTCTAATGACTGTTTACTAGAGGTGTAACGGATGATCCATGATctgtacggatcaca

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0035101 FACT complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0042393 histone binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-209 Predicted to enable histone binding activity and nucleosome binding activity. Predicted to be involved in regulation of chromatin organization. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in chromosome and nucleus. Predicted to be part of FACT complex. Orthologous to human SSRP1 (structure specific recognition protein 1).

Ensembl:

ensembl_id ENSDART00000131296

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003121 lncRNA upstream 56987 44647908 ~ 44653968 (+) True XLOC_000545
TCONS_00003120 lncRNA upstream 140086 44567513 ~ 44570869 (+) True XLOC_000542
TCONS_00003119 lncRNA upstream 170817 44523368 ~ 44540138 (+) False XLOC_000541
TCONS_00000912 lncRNA upstream 485663 44222519 ~ 44225292 (+) True XLOC_000523
TCONS_00000904 lncRNA upstream 571554 44135843 ~ 44139401 (+) True XLOC_000522
TCONS_00000947 lncRNA downstream 16046 44753977 ~ 44757011 (+) True XLOC_000547
TCONS_00000954 lncRNA downstream 88389 44826320 ~ 44835738 (+) False XLOC_000552
TCONS_00000962 lncRNA downstream 175905 44913836 ~ 44914405 (+) False XLOC_000554
TCONS_00000965 lncRNA downstream 203701 44941632 ~ 44942285 (+) True XLOC_000555
TCONS_00000968 lncRNA downstream 230531 44968462 ~ 44971240 (+) False XLOC_000557
TCONS_00000940 mRNA upstream 119466 44582369 ~ 44591489 (+) True XLOC_000543
TCONS_00000939 mRNA upstream 119468 44582369 ~ 44591487 (+) False XLOC_000543
TCONS_00000934 mRNA upstream 144522 44523516 ~ 44566433 (+) False XLOC_000541
TCONS_00000935 mRNA upstream 144523 44540293 ~ 44566432 (+) False XLOC_000541
TCONS_00000936 mRNA upstream 145900 44540413 ~ 44565055 (+) False XLOC_000541
TCONS_00000946 mRNA downstream 8223 44746154 ~ 44758388 (+) False XLOC_000547
TCONS_00000948 mRNA downstream 29726 44767657 ~ 44770054 (+) False XLOC_000548
TCONS_00000950 mRNA downstream 42918 44780849 ~ 44783558 (+) True XLOC_000549
TCONS_00000951 mRNA downstream 62367 44800298 ~ 44801179 (+) False XLOC_000550
TCONS_00000952 mRNA downstream 62461 44800392 ~ 44801162 (+) True XLOC_000550
TCONS_00000941 other upstream 120574 44590267 ~ 44590381 (+) True XLOC_000544
TCONS_00000938 other upstream 145609 44559451 ~ 44565346 (+) True XLOC_000541
TCONS_00000933 other upstream 203702 44507134 ~ 44507253 (+) True XLOC_000540
TCONS_00000911 other upstream 483501 44222222 ~ 44227454 (+) False XLOC_000523
TCONS_00000895 other upstream 1445714 43265123 ~ 43265241 (+) True XLOC_000510
TCONS_00000949 other downstream 31103 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00000970 other downstream 245894 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00000971 other downstream 249065 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000975 other downstream 269472 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00000982 other downstream 432115 45170046 ~ 45170652 (+) True XLOC_000563

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_07860522_07873182.mRNA True 2161 mRNA 0.47 17 CI01000049 7860522 ~ 7873354 (-)