RNA id: TCONS_00000937


Basic Information

Item Value
RNA id TCONS_00000937
length 882
RNA type mRNA
GC content 0.61
exon number 3
gene id XLOC_000541
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44523368 ~ 44566433 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACCTAAACCGGAGCTCAGATACCCGGGATTGTCACGAGGACCTGCCGGACACTCTGAGGaGAGTAGTCTGTTGAATAAAGCTCCACCCACCCCCACCATGTTCAAATACAGGCCTACATACAGCAGTCCGGGCAAGAATCACACTGCCCTCACTCATGCCTATGCCAATCAGATGAGTCGTGGGGACAGTCTTAAAGAGTCCTCTTCCTCTCTCCTGCAGTCCAGTCAGCAGCCCGGCTATCGCTCTGAGCCCAGTCTGGATGGGCGCGAGGGGGGAGGAGCAGAGCGAAGCGGGGCCGAGCGAACAGGTGGGGGCCCTGGAGGACCTCCAGGCTCAGGAATCCCAGGCTACTCCCTAGGAGGTCGCTCATATCCCTCCTTTTCTGATCCTACAGTGCTCGCCGAAAGAGCCTCGCGCTCCTCCAGCGTTCGCTCCACACACAACGCCCCGCCATCCGAAGCCACCACCTCCACCAGCTACAAGAGCTTAGCCAATCAGACTCCGCCGCAGGCTGCGAGGAACGGTAGCCTGTCCTACGATAGTCTCCTCACACCTTCCGAAAGCCCCGATTTTGAATCGGCAGCACCAGAGATGTCTCCGGGTCGCCCACGAACGCCTGTAGTTGGATATAGCTCCCCCTTCCTGTCAGCACAAATTGCCCATCAGAGGGAGGCAGAGCTCCACCAGCCGGTGGCCTCTAGCTCCGCCCTCATGGCCTCTCCTCAGCATGCAGTGTTTCTCCGTGGTTCCGGTTCTCCACCCGTTCCCCCTGAGCGCGAGCGGGAGCGCCTGCTGCACGATTCGCAAGCTCAgcaccatcaccaccaccaccatcatcaccaccaccatcGGCCGCCCCGCTTCTCTCGACCCCCTCTG

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0140223 general transcription initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-090312-92 Predicted to enable palmitoyltransferase activity. Predicted to be involved in protein palmitoylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human ZDHHC5 (zinc finger DHHC-type palmitoyltransferase 5).

Ensembl:

ensembl_id ENSDART00000149764

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003119 lncRNA upstream 13967 44523368 ~ 44540138 (+) False XLOC_000541
TCONS_00000912 lncRNA upstream 328813 44222519 ~ 44225292 (+) True XLOC_000523
TCONS_00000904 lncRNA upstream 414704 44135843 ~ 44139401 (+) True XLOC_000522
TCONS_00002867 lncRNA upstream 462560 44090971 ~ 44091545 (+) True XLOC_000521
TCONS_00002866 lncRNA upstream 487621 44066244 ~ 44066484 (+) True XLOC_000520
TCONS_00003120 lncRNA downstream 7951 44567513 ~ 44570869 (+) True XLOC_000542
TCONS_00003121 lncRNA downstream 88346 44647908 ~ 44653968 (+) True XLOC_000545
TCONS_00000947 lncRNA downstream 194415 44753977 ~ 44757011 (+) True XLOC_000547
TCONS_00000954 lncRNA downstream 266758 44826320 ~ 44835738 (+) False XLOC_000552
TCONS_00000962 lncRNA downstream 354274 44913836 ~ 44914405 (+) False XLOC_000554
TCONS_00000932 mRNA upstream 58203 44491898 ~ 44495902 (+) True XLOC_000539
TCONS_00000931 mRNA upstream 60557 44491077 ~ 44493548 (+) False XLOC_000539
TCONS_00000930 mRNA upstream 105718 44442140 ~ 44448387 (+) True XLOC_000538
TCONS_00000929 mRNA upstream 107188 44439661 ~ 44446917 (+) False XLOC_000538
TCONS_00000928 mRNA upstream 135949 44396048 ~ 44418156 (+) True XLOC_000537
TCONS_00000939 mRNA downstream 22807 44582369 ~ 44591487 (+) False XLOC_000543
TCONS_00000940 mRNA downstream 22807 44582369 ~ 44591489 (+) True XLOC_000543
TCONS_00000942 mRNA downstream 151393 44710955 ~ 44737931 (+) False XLOC_000546
TCONS_00000943 mRNA downstream 151413 44710975 ~ 44730367 (+) False XLOC_000546
TCONS_00000945 mRNA downstream 151884 44711446 ~ 44737512 (+) False XLOC_000546
TCONS_00000933 other upstream 46852 44507134 ~ 44507253 (+) True XLOC_000540
TCONS_00000911 other upstream 326651 44222222 ~ 44227454 (+) False XLOC_000523
TCONS_00000895 other upstream 1288864 43265123 ~ 43265241 (+) True XLOC_000510
TCONS_00000894 other upstream 1329514 43224477 ~ 43224591 (+) True XLOC_000509
TCONS_00000892 other upstream 1518465 42850198 ~ 43035640 (+) False XLOC_000507
TCONS_00000941 other downstream 30705 44590267 ~ 44590381 (+) True XLOC_000544
TCONS_00000949 other downstream 209472 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00000970 other downstream 424263 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00000971 other downstream 427434 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000975 other downstream 447841 45007403 ~ 45009616 (+) True XLOC_000559

Expression Profile

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