RNA id: TCONS_00001025


Basic Information

Item Value
RNA id TCONS_00001025
length 650
RNA type processed_transcript
GC content 0.49
exon number 6
gene id XLOC_000596
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 47089501 ~ 47105214 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCGTTGGAGTGACCGTTGCAGAGCATATGCTAGTGTATGGAGACGAAGCGCGCCCTGAAATCCTACAgattcctcctcctcctcctcccgcAGTCACTGTCATAAAAAGGACAATCGGCCTGAGCTCAAAAACAGTCTTCTTACCTCATCATTCAGTTTCCATTATGACTCCAGCACTCTGCGAGGGAATCAACTAAAGGGGCATGAGGTGACAGGCGGAGGCTCTTCTGTCCTTTTTTGACGCTCGAGAGTTTACCCACTAACATTGGCAACCATCAGGTCAAAGTTCAAGTAAAGAGCTGTGCACTAAGTCCAGTTGATTTTAAgATGTATGAAGACCTCAAGCTTGAGAAGGAGCATGTTCCAGTTGGAAGGGAGATCGCTGGGGTTGTTCTTCAAGTGGGACCCAAAGTGATGTTTTTCCAACCAGACGATGAGGTTGTGGGGATTCTCCCATTGGATGCTGAGCAGTCTGGCCTTTGTTCAGTCGTGCTTATTGACGAATTTAATCTAGTTCCGAAGCCGGAGAAAGTGAGCTGGTTTGAAGCAGCAGCGGTAATTAAAGATGGTCTCAGGGCCTACACCGCTCTTCATACGCTGGCACGAATGGCAGCAGGACAGACTGTACTGGTGCTGGATGGGGCGTCT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-378 Predicted to enable oxidoreductase activity. Orthologous to human CRYZL1 (crystallin zeta like 1).

Ensembl:

ensembl_id ENSDART00000143825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003140 lncRNA upstream 125273 46959902 ~ 46964228 (+) False XLOC_000595
TCONS_00003141 lncRNA upstream 125273 46960233 ~ 46964228 (+) True XLOC_000595
TCONS_00001023 lncRNA upstream 243825 46827891 ~ 46845676 (+) True XLOC_000593
TCONS_00003139 lncRNA upstream 353385 46735728 ~ 46736116 (+) True XLOC_000592
TCONS_00003133 lncRNA upstream 362544 46719096 ~ 46726957 (+) False XLOC_000591
TCONS_00003143 lncRNA downstream 57325 47153190 ~ 47155997 (+) True XLOC_000597
TCONS_00003144 lncRNA downstream 357728 47453593 ~ 47459506 (+) False XLOC_000602
TCONS_00003145 lncRNA downstream 357800 47453665 ~ 47459506 (+) False XLOC_000602
TCONS_00003146 lncRNA downstream 357910 47453775 ~ 47459506 (+) False XLOC_000602
TCONS_00003147 lncRNA downstream 357944 47453809 ~ 47459506 (+) True XLOC_000602
TCONS_00001024 mRNA upstream 132150 46948010 ~ 46957351 (+) True XLOC_000594
TCONS_00001022 mRNA upstream 434973 46652615 ~ 46654528 (+) True XLOC_000590
TCONS_00001021 mRNA upstream 472218 46598764 ~ 46617283 (+) True XLOC_000589
TCONS_00001020 mRNA upstream 477452 46598502 ~ 46612049 (+) False XLOC_000589
TCONS_00001016 mRNA upstream 495213 46493944 ~ 46594288 (+) False XLOC_000588
TCONS_00001028 mRNA downstream 69977 47165842 ~ 47173177 (+) False XLOC_000598
TCONS_00001029 mRNA downstream 70123 47165988 ~ 47173403 (+) True XLOC_000598
TCONS_00001030 mRNA downstream 82664 47178529 ~ 47187878 (+) False XLOC_000599
TCONS_00001031 mRNA downstream 82664 47178529 ~ 47202163 (+) False XLOC_000599
TCONS_00001032 mRNA downstream 82687 47178552 ~ 47184966 (+) True XLOC_000599
TCONS_00001019 other upstream 502899 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001013 other upstream 687865 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00000997 other upstream 1320971 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00000982 other upstream 1918849 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 2079885 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00001046 other downstream 801404 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001047 other downstream 818230 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001054 other downstream 2368876 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001057 other downstream 2494836 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001068 other downstream 2604038 49699903 ~ 49715822 (+) False XLOC_000626

Expression Profile

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