RNA id: TCONS_00001031


Basic Information

Item Value
RNA id TCONS_00001031
length 3003
RNA type mRNA
GC content 0.46
exon number 17
gene id XLOC_000599
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 47178529 ~ 47202163 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTGCACAAATAAGAATTGGGAAGCACCCCTCGAGTGAGAGAGTGTTCGCTATATCGGAACAGGGGAAGCGAAAGTGCCTCAGCACTTTAACAAACACTTCGCTCAACTTTCCTGAATATCCAGCACAGATCTGTCCCGCAGAAATGGCTGCTGGAAAATGTGGCATTCCTCTGAGCACAATCAGTCCAAAGTTTCTTCATTCTAATTCCACAAGTCACACCTGGCCGTTCAGCGCTATAGCCGAGCTGATCGATAATGCTTATGACCCAGACGTTCGTGCCAGACAGATGTGGATCGACAGGACGTGCATCAGAGGACTGGACTGCCTCTCTTTCATGGATAACGGACAGGGTTTGACCAGAGCCAAACTGCACAAGATGCTCAGCTTTGGTTTCAGTAAAAAGAGAGCTTTGAAACTTCACATTCCAGTTGGCGTGTACGGAAATGGATTCAAATCGGGGTCCATGCGCTTGGGAAAAGATGCCATTGTTTTCACCAAGACTAAAGACACCATGAGTGTGGGGCTCCTGTCGCAGTCTTACCTCAAGGCCATCGGTGCTCAGCGAGTCCTGGTGCCCATGATCACGTTTAGACGCGACGGACAAAACCAAGTGGAGGACGAAGCCAGTCTGTGGGCGATCCTCACACAATCGCTCTTCAGATCGAAAAAAGAGCTGTTCGATGAGCTCCGCGCCATCAGCGCCGTCGGATACACAGGAACACGCATCATCATTTGGAACCTGCACAcGACAACAAATGGCGAGACTGAGTTTGACTTTAACACCAGTAAATATGACATTCTGATCAGGTGGAACATCAGTGAGAGAAGCAACGGTGACCTCGCCATGATCCCAGAAAGTGAATACTCATTACGGGCATACTGTAGCATCTTATACCTGAAACCTCGCATGCAGATCATCATACGTGGACAAAGAGTGAAGAGTCAACTGATATCCAAAAGTCTGGCTCATATTGCGCAGGACAACTACAGGCCGTCATTCCTTAATAAGCGTTTGCGCATCACTTTCGGATACAACACCAAAAGCAAAGAGCATTATGGGATTATGATGTACCATAAGAACAGACTTATAAAGCCATACGTGAAAGTGAGCTGCCAATGTAAGGCCGAGAGGAGAGGCGTGGGCGTTATTGGTGTTATAGAGTGCAATTTTCTTCAGCCCACTCACAACAAACAAGACTTTGATGACACCGATAAATACAGGAAGATCATGCACAACCTCAGCATAAAGCTGGAGGAGTACTGGAACGAAATCCGCTACAAACGAAAGAAAGAGGATCCAAAGTGCACCGTGGCGGTAGAGGATGTGTTGAAAGACCCAGATCAAGTGTGGGTTCAGTGTGACAGCTGTCTGAAGTGGCGGAGGCTTCCAGATGGCATCACTGAGCTGCCGGAGAAATGGTTCTGCAGCATGAACTACGACCCACAGTTCAGGAACTGCCAGGTAGAAGAAGAGCTAGAAGACGAGGAGGAAGATCAGAAGTCGTACCCTAAACCATTTAAACGCAAGAGGAGAAACACAAAGAGTCTGCTTGAGGAGAATGTTCCGGAGagctcACAGATTGAAGACCAACAAGGAGCATTAACATCAAGTCAAGCACCCAGACACCCACCAGCCTCTGTTTTGCCTGgtcTATCTTTAGCCGAGAGGTCTCCTTTGCCCCTCATTAACCTCACCGCGGTCTCCAACTCTCTAAACAGAGTAAAGCAGAAATTCTCTGCCCCAGAAACCCAGATTGAAGTGACTCCATCTTTTCCTGTCGCCCCATTCACCCCTTTAGAAGATCTCTCCTCTCAAACTCTCCATCCTGCTTTGAACAAGGAGAGAAAATCCTTGTCCTTGATGAAAGGATTGGAGTTGCATCGGGGTCCCGTATGTGAAAGAGATGCATCATCTGGGACAGGGGGGGAGCACGGCTCGGCGACGGAGCAGATAATTGAATTGGCCCTGAAAAATGAGAAGAAAGAGGTGGTTTATCATGGAGGTGGTGTTGTtggtgaggaagaggaggaggaggagggatgGAAGCTGGCAGAGGTGCAACAGAGGTGGCAGGAAGAGTTAACGGAGGTGATGAACGACAGAGATGTGTGCCGTCAGGAGCTAGAAGAAATGAGGGAGGACAGTGCCGCCCTGGAGGAGGAGAGAAACCGGCTTCTCAGCAGACTGGAAAAGGTGGAGAAGGAGAAGAACGACCTGTCTGTTCTATGTGATCAGTTGAAGAATCAACTGTCAGAGTTTAGAGAACAGAATCAGAGGGGAACAGAAGAGAAAGATGTCCGACTGATGACACTGCGTCAAAACCTGTGCCGTCTGCTGGTGTCTTTCATTCCTTCTCTTCATGTAGAGAATGTGGATTACAGCAGTGACGTCATGGACAACATCCTCATCCAGGTTCTGGAGCGCATCACTTAAAACATTGGTAAAAGGTTACGTTAAATCTTATGACTGAACACTTGTATATAGGGATAGAAATTAACTTTCATATTAAGGGACAACATTTGACCTATGGAATAGATTTGCGATGGCCAGCATGCTCCGATGAAGATCTGATATGTTGACATTCAAGAGTTAGATGTTCATTTTTCTCAGAGAAATATATTGTTTCCACCATGTCCTCTGTATCCTTTCTGGCTCTTTCCACAGACCAGCCCTCTTCATATCTTATTTCTGAGCTCAGCACATACTCGTCTACCACTTAATCTGTCACTCTCACTATTTATCAGATCTGTTTTTAAAGACATCCTTCCTCCAGTGAATACAGAATAAAGAGACTCGGTGAACTTATCAGCTTACATCCATTTGTGCTGAAAATAAAACCTATGAATGTGAGCTAATCATTAAAAggcctattttatttttaacatcacTCTCCGTTCATTTGCCAAGGAGAGACCGAGATGTAACATAAATGAACACCCGTATGCATTAAAGGTTgtgagttaattaaataaacttaaaatctTTTGCTACTACTCTTC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-98 Predicted to enable zinc ion binding activity. Is expressed in optic primordium; optic vesicle; and ventral mesoderm. Orthologous to human MORC3 (MORC family CW-type zinc finger 3).

Ensembl:

ensembl_id ENSDART00000074450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003143 lncRNA upstream 22532 47153190 ~ 47155997 (+) True XLOC_000597
TCONS_00003142 lncRNA upstream 76733 47089501 ~ 47101796 (+) False XLOC_000596
TCONS_00003140 lncRNA upstream 214301 46959902 ~ 46964228 (+) False XLOC_000595
TCONS_00003141 lncRNA upstream 214301 46960233 ~ 46964228 (+) True XLOC_000595
TCONS_00001023 lncRNA upstream 332853 46827891 ~ 46845676 (+) True XLOC_000593
TCONS_00003144 lncRNA downstream 251430 47453593 ~ 47459506 (+) False XLOC_000602
TCONS_00003145 lncRNA downstream 251502 47453665 ~ 47459506 (+) False XLOC_000602
TCONS_00003146 lncRNA downstream 251612 47453775 ~ 47459506 (+) False XLOC_000602
TCONS_00003147 lncRNA downstream 251646 47453809 ~ 47459506 (+) True XLOC_000602
TCONS_00001040 lncRNA downstream 283960 47486123 ~ 47490094 (+) True XLOC_000604
TCONS_00001029 mRNA upstream 5126 47165988 ~ 47173403 (+) True XLOC_000598
TCONS_00001028 mRNA upstream 5352 47165842 ~ 47173177 (+) False XLOC_000598
TCONS_00001026 mRNA upstream 73315 47091468 ~ 47105214 (+) False XLOC_000596
TCONS_00001024 mRNA upstream 221178 46948010 ~ 46957351 (+) True XLOC_000594
TCONS_00001022 mRNA upstream 524001 46652615 ~ 46654528 (+) True XLOC_000590
TCONS_00001033 mRNA downstream 129481 47331644 ~ 47409063 (+) False XLOC_000600
TCONS_00001034 mRNA downstream 132875 47335038 ~ 47411186 (+) False XLOC_000600
TCONS_00001035 mRNA downstream 189241 47391404 ~ 47409063 (+) True XLOC_000600
TCONS_00001036 mRNA downstream 243869 47446032 ~ 47447725 (+) False XLOC_000601
TCONS_00001037 mRNA downstream 243869 47446032 ~ 47448850 (+) True XLOC_000601
TCONS_00001027 other upstream 76733 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001025 other upstream 82664 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001019 other upstream 591927 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001013 other upstream 776893 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00000997 other upstream 1409999 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00001046 other downstream 695106 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001047 other downstream 711932 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001054 other downstream 2262578 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001057 other downstream 2388538 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001068 other downstream 2497740 49699903 ~ 49715822 (+) False XLOC_000626

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000119_01464980_01476481.mRNA True 2791 mRNA 0.44 13 CI01000119 1464265 ~ 1476481 (-)