RNA id: TCONS_00001037


Basic Information

Item Value
RNA id TCONS_00001037
length 2459
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_000601
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 47446032 ~ 47448850 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGACTGGATTCAGTCACTTCTGCTCATTCGGGCGACAAGGATTGGAGGCCATAGGTGGGAACCAGAGAGCAAAAAGTTCACTTCACACCACAGTGTGCCAAGAGAAGGGGGAACACAAATACTCTGGAGCTCTTACTGTGTGCTGACAGTCAACCATGGGTGACTGGAGTTTCTTGGGCAACATCCTCGAGGAAGTAAATGAGCATTCGACGGTAATCGGTAGGGTGTGGCTCACGGTCCTCTTCATCTTCCGAATCCTCATCTTGGGCACAGCCGCAGAGTTTGTGTGGGGCGACGAGCAATCGGATTATGTGTGCAACACGCAGCAGCCGGGTTGCGAGAACGTTTGCTACGACGAGGCCTTTCCCATCTCGCACATTCgcctctgggtgctccagatCATCTTTGTTTCCACACCCTCATTAGTGTACGTGGGCCACGCCGTGCACCATGTACACATGGAGGAGAAGCGTAAGGAACGGGAGGAGGCTGAGCTCAACCGGCAGCAAGAGAACGAGGAGAGGCTGCCGCTGGCGCCTGATCAGGGAAGCGTCCGTACGGCCAAGGAGACGAGCACAAAGGGCAGCAAGAAGTTTCGTCTGGAGGGCACTCTCCTGAGGACCTATATCTGCCACATTATCTTCAAGACTCTCTTTGAGATCGGCTTTGTGGTGGGTCAATACTACTTGTACGGCTTCCGAATCTTGCCACTCTACAAGTGCAGCCGTTGGCCGTGCCCAAACACGGTTGACTGCTTCGTCTCAAGACCAACCGAGAAAACCGTTTTCATCATCTTCATGTTAGCTGTGGCCTGCGTCTCACTGTTCCTCAATTTTGTGGAAATCAGCCATTTAGGCTTAAAAAAGATCCACTTTGTGTTTCGTAAGCCGGTGCGGCCGCAAGTCGAGGGACCAGGAGCAGCCGAAAAGGCATTGCCTTCCATAGCTGCCTCATCGATCCAGAAAGCCAAAGGTTACAAGTTGTTGGAGGAGGACAAATCCACGTCGCACTTCTTTCCTCTGACTGAGGTTGGGGGGATGGAGGCTGGACGCCTGCCGGCTTCATATGAGCCATTTGAGGAGAAATCTGACGAGGCCATGGCACCTAAGAAAGACATGTCTAAGATGTATGACGAAACGCTGCCCTCTTACGCCCAGACGACCGTGATTGGACCGAGTGCATCGTCAGGAATTCTGCGCAGGGATGAAGATGAGGACGAGTTGGCTGTGGAGGCAGACATGGAGGCCAGCGAGACGATAGAAGATACACGACCGCTCAGCAGCCTGAGCAAGGCCAGCAGTCGCGCAAGGTCAGATGACTTGACGGTATAAGTGATCCAGTGGAACTGGATTAGAAGTGCAGCAGTGTAAGTTGTAGTTTTGgggaaagtgagtaaacctgaaaGAGATTTAGAAGAAAGGATGAGGTGCCTTTCGGGCAACTGCGGCGTCACTTATAATACCAGCTTCTTTTTTTGAAGGAAGGaaatgattgaaaaaaataatgctGTGCAATTTTCATGAGGAAACTTGAGAgcttgattcattttttttatacagcAGTATTTTTCGTACTGTTTTTTATCAAACAGTTAACAAACCAGAGCTAGGGATCTGCAGCAGCTAGATCTACACATAGGGAGGAATCGGGAGAAGGTATTTAGCGAACAATATGtggtgtttttttaataataacattttctaTCCAGAATTTTACCGAGGCGAGATTCTGATGTTTACATTTTTGGATTAGCCATTAGCTGAATGTTTGTTTGTGACATTTTTTGTTCTTATTCTGATAAGAAAACTGTCAGGGCATCATCCTTTTCACCTCAATCATTTCAACCATACATGATGATGATTACTCGATCAATCTTCTTGATTTGTATGTGAATGGTACTGTAACGCATAGGTGTATGTGAGGTGACACAAATGCTGATGGTTTTGTTGCACAGTCGTTCATCATGGCATAATAGTGACATAAAgactatttatttaaaagaaatgacCACCACTGATATACGTCAAACATGATGACCTTGTTTCTGGTTTCACTCACTTACATTGAGAGTCATAAACTGAGTGTATCTAGCGATAACTGTAATAACTGCGTTAGCCATAGAAGAGATAGTAGGCCACATTCTTTCTAGTCTCTCTGCGCAAGCagccatgatgatgatgataaagatcACGCCCAATCAGCACAAAGTATTGTTTAACAGGAGACAATAAAACAACATTACATGACATGCCACCGCAGACAGTCTCACATCCTTGATGTTGTTGGAAACAACATTTGAGTGCTTTTTCCCTTCAGAAAAGGACTGGAAATAATTCAGAATATTTCAAAAGGCCAGAACAGAAGTGTTTTGCCCCTTgattaagttaatatttttagcAGAGACACCTTGTTTTTGGTTTTAAATATGCCTAGGAGTTTAGAGTGATGTATAGAAA

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007154 cell communication biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function
GO:0005243 gap junction channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010607-3 Enables gap junction hemi-channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within cell communication. Predicted to be integral component of plasma membrane. Predicted to be part of connexin complex. Is expressed in several structures, including eye; kidney; liver; solid lens vesicle; and spinal cord. Human ortholog(s) of this gene implicated in cataract and cataract 1 multiple types. Orthologous to human GJA8 (gap junction protein alpha 8).

Ensembl:

ensembl_id ENSDART00000007262

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003143 lncRNA upstream 290035 47153190 ~ 47155997 (+) True XLOC_000597
TCONS_00003142 lncRNA upstream 344236 47089501 ~ 47101796 (+) False XLOC_000596
TCONS_00003140 lncRNA upstream 481804 46959902 ~ 46964228 (+) False XLOC_000595
TCONS_00003141 lncRNA upstream 481804 46960233 ~ 46964228 (+) True XLOC_000595
TCONS_00001023 lncRNA upstream 600356 46827891 ~ 46845676 (+) True XLOC_000593
TCONS_00003144 lncRNA downstream 4743 47453593 ~ 47459506 (+) False XLOC_000602
TCONS_00003145 lncRNA downstream 4815 47453665 ~ 47459506 (+) False XLOC_000602
TCONS_00003146 lncRNA downstream 4925 47453775 ~ 47459506 (+) False XLOC_000602
TCONS_00003147 lncRNA downstream 4959 47453809 ~ 47459506 (+) True XLOC_000602
TCONS_00001040 lncRNA downstream 37273 47486123 ~ 47490094 (+) True XLOC_000604
TCONS_00001034 mRNA upstream 34846 47335038 ~ 47411186 (+) False XLOC_000600
TCONS_00001033 mRNA upstream 36969 47331644 ~ 47409063 (+) False XLOC_000600
TCONS_00001035 mRNA upstream 36969 47391404 ~ 47409063 (+) True XLOC_000600
TCONS_00001031 mRNA upstream 243869 47178529 ~ 47202163 (+) False XLOC_000599
TCONS_00001030 mRNA upstream 258154 47178529 ~ 47187878 (+) False XLOC_000599
TCONS_00001038 mRNA downstream 10873 47459723 ~ 47485360 (+) True XLOC_000603
TCONS_00001039 mRNA downstream 37254 47486104 ~ 47492961 (+) False XLOC_000604
TCONS_00001041 mRNA downstream 51038 47499888 ~ 47513484 (+) True XLOC_000605
TCONS_00001042 mRNA downstream 136850 47585700 ~ 47686888 (+) False XLOC_000606
TCONS_00001043 mRNA downstream 136851 47585701 ~ 47683257 (+) True XLOC_000606
TCONS_00001027 other upstream 344236 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001025 other upstream 350167 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001019 other upstream 859430 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001013 other upstream 1044396 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00000997 other upstream 1677502 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00001046 other downstream 448419 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001047 other downstream 465245 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001054 other downstream 2015891 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001057 other downstream 2141851 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001068 other downstream 2251053 49699903 ~ 49715822 (+) False XLOC_000626

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000119_01319695_01320873.mRNA True 2419 mRNA 0.45 1 CI01000119 1318783 ~ 1321201 (-)