Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001054 |
| length | 851 |
| RNA type | processed_transcript |
| GC content | 0.43 |
| exon number | 7 |
| gene id | XLOC_000620 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 49435017 ~ 49481173 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006396 | RNA processing | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0032040 | small-subunit processome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ko03009 | Ribosome biogenesis |
| id | description |
|---|---|
| ZDB-GENE-030131-4076 | Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing and rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; midbrain; musculature system; and segmental plate. Orthologous to human PDCD11 (programmed cell death 11). |
| ensembl_id | ENSDART00000122961 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003150 | lncRNA | upstream | 212087 | 49244352 ~ 49252654 (+) | True | XLOC_000616 |
| TCONS_00003149 | lncRNA | upstream | 312734 | 49134464 ~ 49152007 (+) | True | XLOC_000615 |
| TCONS_00001049 | lncRNA | upstream | 537692 | 48923328 ~ 48927049 (+) | False | XLOC_000614 |
| TCONS_00003148 | lncRNA | upstream | 537692 | 48924401 ~ 48927049 (+) | True | XLOC_000614 |
| TCONS_00002873 | lncRNA | upstream | 627819 | 48835224 ~ 48836922 (+) | True | XLOC_000613 |
| TCONS_00001058 | lncRNA | downstream | 178687 | 49651012 ~ 49657312 (+) | False | XLOC_000624 |
| TCONS_00001063 | lncRNA | downstream | 201156 | 49673481 ~ 49674004 (+) | False | XLOC_000624 |
| TCONS_00001065 | lncRNA | downstream | 201164 | 49673489 ~ 49674004 (+) | False | XLOC_000624 |
| TCONS_00003151 | lncRNA | downstream | 227057 | 49699382 ~ 49713723 (+) | False | XLOC_000626 |
| TCONS_00003152 | lncRNA | downstream | 227057 | 49699382 ~ 49774940 (+) | False | XLOC_000626 |
| TCONS_00001052 | mRNA | upstream | 32594 | 49415281 ~ 49432147 (+) | True | XLOC_000619 |
| TCONS_00001051 | mRNA | upstream | 109428 | 49352900 ~ 49355313 (+) | True | XLOC_000618 |
| TCONS_00001050 | mRNA | upstream | 169682 | 49266886 ~ 49295059 (+) | True | XLOC_000617 |
| TCONS_00001048 | mRNA | upstream | 974707 | 48256950 ~ 48490034 (+) | True | XLOC_000612 |
| TCONS_00001045 | mRNA | upstream | 1452484 | 47831619 ~ 48012257 (+) | True | XLOC_000607 |
| TCONS_00001055 | mRNA | downstream | 37884 | 49510209 ~ 49512544 (+) | True | XLOC_000621 |
| TCONS_00001056 | mRNA | downstream | 96010 | 49568335 ~ 49605854 (+) | True | XLOC_000622 |
| TCONS_00001059 | mRNA | downstream | 178691 | 49651016 ~ 49674006 (+) | False | XLOC_000624 |
| TCONS_00001060 | mRNA | downstream | 178697 | 49651022 ~ 49674003 (+) | False | XLOC_000624 |
| TCONS_00001061 | mRNA | downstream | 180642 | 49652967 ~ 49673888 (+) | False | XLOC_000624 |
| TCONS_00001047 | other | upstream | 1550532 | 47914095 ~ 47914209 (+) | True | XLOC_000609 |
| TCONS_00001046 | other | upstream | 1567356 | 47897269 ~ 47897385 (+) | True | XLOC_000608 |
| TCONS_00001027 | other | upstream | 2362945 | 47095825 ~ 47101796 (+) | True | XLOC_000596 |
| TCONS_00001025 | other | upstream | 2368876 | 47089501 ~ 47095865 (+) | False | XLOC_000596 |
| TCONS_00001019 | other | upstream | 2878139 | 46582467 ~ 46586602 (+) | True | XLOC_000588 |
| TCONS_00001057 | other | downstream | 118376 | 49590701 ~ 49590823 (+) | True | XLOC_000623 |
| TCONS_00001068 | other | downstream | 227578 | 49699903 ~ 49715822 (+) | False | XLOC_000626 |
| TCONS_00001079 | other | downstream | 658833 | 50131158 ~ 50132009 (+) | True | XLOC_000630 |
| TCONS_00001084 | other | downstream | 1382039 | 50854364 ~ 50854478 (+) | True | XLOC_000638 |
| TCONS_00001097 | other | downstream | 1594457 | 51066782 ~ 51073107 (+) | False | XLOC_000645 |
