RNA id: TCONS_00001052


Basic Information

Item Value
RNA id TCONS_00001052
length 2701
RNA type mRNA
GC content 0.52
exon number 11
gene id XLOC_000619
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49415281 ~ 49432147 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaacgtcaGATTTACGTCAGACGTACCACATGCGTCATGACGTAATCACATCCAGCGCCGGGGGAAAAATGGCGGCTGTGCAGGATGGACCGATGGAGGTGGACGCAGAGAAAGAGACAAAACCCGAAATCCTCAGCGATGGGACGGCAAATCCGTCGGGGAACACCGGCGGCGGGACTCTGTCCTCATCGCCACTCACCGCAGCCCCGGCCGCCGGAGCCCCGAAGCCGGAGGACCAGCAAACTCTGCTCGCGGTGCTGCAGTTCCTGAAGCGAAGTAAACTGGCGGAATCGGTGGAGATCCTGCGGCGGGAGGCTGGTTTagcagaggagctggaggacTCGCATACCGACGCCGGTGCAGGAGGGAAGGACGGAGACGCAGGAGATACAAAAACTCTGCTCAGCCGTGTGTCCATCGCCGGTGCAGCCGCCCCGCAGAGCACACTCACCCCCATACCTGCGAAGAGTGGAGACGACCAGCCGGATGTCAGTGTGGTGTTGTCAGCGTACAGCCAGCAGGGTGACCCGTCTCTGTATAAGGTGTATTACAGTGACTTGAAGAAGTTCATTGAGTCGGTGCTGGACTGTCACCGGGCAGAGCTCTCGCAGCTCTTCTACCCTCTGTTCGTCCACATGTACCTGGAGCTGGTCTACAACAACCACGAGAGCGAAGCCAAGGCTTTCTTTGATAAGTTCAGCGGAGATCAGGAGTGTTACTATGAGGATGACCTGCGGGTTCTCTGCGGACTCACTAAGAAAGAGCACATGAAGGGGAACGAGGCTCTGCTGGATTTTCGGACGAGTCGCTTCGTGCTGCGCATCTCCAGAGACTCGTACCAGCTGCTGAAGAGACACTTACAGGAGAGGCAGAACAACCAAATATGGAACATCATTCAGGAGCACTTGTACATCGACATCTTTGACGGCATGCCGCGCAGCAAGAGCCAGATCGACAGCATGTCCGGCAGTCTCGCAGGAGAGGCCCGACGAGAAGTCAATAAAGTCAAGGTATTCTATGGGCTGCTGAAGGAACCAGAGATCGAGGTCCCGCTAGATGATGAGGATGAGGAAGCAGAGAATGAAGAAGGGaagccaaagaagaagaagactaAAAAGGACAGCATGGGCTCCAAGAGTAAAAAACAAGACCCCAACGCCCCTCAACAGAACAGGATCCCTCTGCCAGAGCTGAAGGACTCGGATAAACTGGACAAAATCATGTACATGAAGGAGAGCACCAAAAGAATCCGCCTCGGCCCGGAAACCCTGCCCTCCATCTGCTTCTACACATTCCTCAACGCCTACCAGGGCTTGACAGCAGTAGATTTCACCGATGACTCAAGTCTGATAGCGGGGGGCTTTGCAGACTCTACAGTCCGCGTGTGGAGCGTCACACCCAAAAAACTACGCAAAGTCAAATCTGCTGCAGacctgaATTTGATTGATAAAGAGTCAGATGATGTTCTAGAGAGGATCATGGATGAGAAGACGTCCAGCGAGTCTAAGATCCTCCATGGTCACAGTGGGCCAGTGTATGGGGTCAGCTTCAGCCCAGACAGGAACTATCTGTTGTCCAGCTCTGAGGACGGTACAATCCGACTATGGAGCCTGCAGACGTTTACTTGTCTTGTAGGGTATAAAGGACACAATTATCCAGTGTGGGACACTCAGTTCTCACCATTCGGCTACTACTTTGTGTCTGGAGGACATGACAGAGTGGCAAGGCTCTGGGCGACGGATCATTACCAGCCTTTACGGATATTTGCTGGTCATCTCGCAGACGTCACCTGCACACGATTCCATCCCAACTCCAACTATGTGGCCACGGGCTCGTCCGACCGCACCGTACGACTCTGGGACGTCCTGAATGGAAACTGTGTTCGCATTTTCACAGGTCACAAGGGGCCCATCCATTCTCTGGCGTTCTCCCCTAATGGGAAGTTCCTGGCCTCTGGATCCACCGACGGGAGAGTTTTGCTGTGGGATATTGGACACGGGCTGATGATCGCAGAGTTGAAGGGTCACACCGGCACTATTTATGCCCTCAAGTTCAGCAGAGATGGAGAAATCATTGCATCAGGCTCTATAGACAACACCGTCCGACTGTGGGACGTCATGAGAGCCATCGATGACGTAGAAACAGACGACTTCACTGCAGCAACGGGCCACATTCACCTGCCGGACAATTCTCAGGAGCTGCTGCTGGGGACGTACCATAGCAAATCCACAGCCGTCATACACCTGCACTTCACCAGACGCAACCTGCTCCTGGCCGCAGGCTCCTACAACTCCCAGTGACCAAAACCGCAAACACTGACCCCCATGTAGCTGTGATGATCTATCAATAATGGTGCATAATATTTAAAGATTCAATCCAGGTCATCCTAACATGTGAAATAAGCGAAGCGAAAGAAATAGTCGAGCACTGAGCATTATGCTGAGACCTATTTTTTTTGTGCTCACTGGCTAATTTTGTTTTGCTTCGATAACATTACTGCCATATTTGCTCATTTTTAAGGCTCATATGCATCATGTGTTTGAAAATGACACGTGTTCTGCTTTTGTACATATAACCATGAACAATTTTTGTAATTCCTAAACTGGTCATTGCTCTTTAAAACATGATGCATCTGAGTGCTGGTCTATACAAGCTTTTATACTACTgcctaaatgtgtaaataaaacagGTTTTCTACAGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0043966 histone H3 acetylation biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-051120-180 Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF5 (TATA-box binding protein associated factor 5).

Ensembl:

ensembl_id ENSDART00000015007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003150 lncRNA upstream 162627 49244352 ~ 49252654 (+) True XLOC_000616
TCONS_00003149 lncRNA upstream 263274 49134464 ~ 49152007 (+) True XLOC_000615
TCONS_00001049 lncRNA upstream 488232 48923328 ~ 48927049 (+) False XLOC_000614
TCONS_00003148 lncRNA upstream 488232 48924401 ~ 48927049 (+) True XLOC_000614
TCONS_00002873 lncRNA upstream 578359 48835224 ~ 48836922 (+) True XLOC_000613
TCONS_00001058 lncRNA downstream 218865 49651012 ~ 49657312 (+) False XLOC_000624
TCONS_00001063 lncRNA downstream 241334 49673481 ~ 49674004 (+) False XLOC_000624
TCONS_00001065 lncRNA downstream 241342 49673489 ~ 49674004 (+) False XLOC_000624
TCONS_00003151 lncRNA downstream 267235 49699382 ~ 49713723 (+) False XLOC_000626
TCONS_00003152 lncRNA downstream 267235 49699382 ~ 49774940 (+) False XLOC_000626
TCONS_00001051 mRNA upstream 59968 49352900 ~ 49355313 (+) True XLOC_000618
TCONS_00001050 mRNA upstream 120222 49266886 ~ 49295059 (+) True XLOC_000617
TCONS_00001048 mRNA upstream 925247 48256950 ~ 48490034 (+) True XLOC_000612
TCONS_00001045 mRNA upstream 1403024 47831619 ~ 48012257 (+) True XLOC_000607
TCONS_00001044 mRNA upstream 1438675 47831619 ~ 47976606 (+) False XLOC_000607
TCONS_00001053 mRNA downstream 2870 49435017 ~ 49481173 (+) False XLOC_000620
TCONS_00001055 mRNA downstream 78062 49510209 ~ 49512544 (+) True XLOC_000621
TCONS_00001056 mRNA downstream 136188 49568335 ~ 49605854 (+) True XLOC_000622
TCONS_00001059 mRNA downstream 218869 49651016 ~ 49674006 (+) False XLOC_000624
TCONS_00001060 mRNA downstream 218875 49651022 ~ 49674003 (+) False XLOC_000624
TCONS_00001047 other upstream 1501072 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001046 other upstream 1517896 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001027 other upstream 2313485 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001025 other upstream 2319416 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001019 other upstream 2828679 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001054 other downstream 32594 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001057 other downstream 158554 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001068 other downstream 267756 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001079 other downstream 699011 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001084 other downstream 1422217 50854364 ~ 50854478 (+) True XLOC_000638

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000301_00643063_00650841.mRNA True 3460 mRNA 0.48 10 CI01000301 642480 ~ 651621 (-)
bowfin (Amia calva) AMCG00003326 True 2283 mRNA 0.54 11 CM030139.1 19656665 ~ 19661649 (-)