RNA id: TCONS_00001055


Basic Information

Item Value
RNA id TCONS_00001055
length 2064
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_000621
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49510209 ~ 49512544 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTGAGAAGCAGAAAAGCGAACAGAGCTCTGCGAAAAACATTTTTAGCCCATTTCAGTTCAACAAGACAAGTTTGTCCTACTTTTAGGTGGGGTAATAaaagGATGGAGGACACACTTCTAAGTGTGTTTGTCGTGGTTGTGAGTCTAATACTTTCAAAGGATCACAATGTGTTTCACGAACAAGATGATGACATTATAGTGAGCATGCAAGACCATGAGCACTTTCTACTGAAGGAGAAGGCAAAGCTGGAACAAGGAGAGCACCCTGTTGCCATAGAGCTGCCATATTCAAATCAGGAAGCATCACAGAGTCACCGCAAGCTGCCAATAGAGGGCCACGTGTCAGATGTTAAACAAATCGAGCCAAATGTCGAGACAAAAGTGTTGCATGAAGAGCAAATGTCCTCAATGGGGGAGCAAAATGAGTTCCGGCAAAAGGCATCAGATGACCAGGAAATACTGAGTATTGACAAAGACAAGTGGACTGTGCATATGGCAAGTGAAGGTCCAACAAATGAGCAAGTCCGCTTAGGGTCAACTGTGGACCAGAATGTGTCTCAGGGGGAAGCTGAACATCCGGAAGAGCCAAAATATGACCGGATCGACACCCATCGTGAACATCAAGCTGATGAAGGATTTGACCAAAAAATACCAACCTCAAGCCAAAGGTTGACAACAAGACCTCAAGAAAAGCAACCGAATGACCAAGATGTCACTTTCATCTATTTCCTCTGGAGGACATATTcaataatttcattatttcattttttgaaaaGGTTCCTGAAGAAGGGATCCAAAACGCAGAAGATGTTGAGATCCACAAACGTCTCCAAAATAGTTTCTAATATCGATTACAAGACCTTAACTAGCTTCCATAACCAGTGCGTTGTGCTCCCACGAAATCACAGCTGGCAAACCTGCGAGTTCGTTGAAGGTTTTGTGAACGACCTTTTGGAAACTGTGAGAAATTCGAGCACTGCAGGTGCAGATATGGAGATTGAGGACTTTGTTGGCATTGGCAGCTTTTATGAGCAATGGGCTTCAAGGAAGAGCGTTGTGTGCGACATACATGTACCCATCATCCCACCAAAGTCGTGTAGCTTTGAGTTTACGCTTTTGAAAGAAAATAGAGGTTCAACTGCACAGAACAGTTGCAGAATCAAGATGGTAAAAAATTCAGGCAACTGCCATTGCAACAGTTCCAACATAGATAATCCTGATGATGATGATCTGTTGTGTCTCCTACATCTAGATAACAAAATCGATGATCATGCACCTGACAAATGCATTAATGATTTATGCCAAGAGAATACCTCATATCTTGCTAAAACTAAAGTTTTGAAGTGGTTTAAAAGCACCGTTAGGAAAGCATGGAACGAGATAAGCCATAAGTATGATTTTGAGCTCATATTCCGGAACAGGGAGAACCCTGGAAGTCTTAAAGTTCGGTTCAGGTCAGGTCGGGTTATTCAGTTCAGACTTACACCTGTGGTCAGGTTTAAAGACTCGGAGGCACATCTGATGTCATATCTTCCCTCTGATGTATTTTCAGACACTTACTGGCCTGTATGTTTTGCACGTTATGAAAATGCTCTTCTTCAACACCTAACCAATACGCTTCCAGACAACGCTTGCCATATTTATGTTCTGCAGATGCTTTCTTTTCTACATAAACACCAAACTGGCCTGACTGGGCCATGCGGGCTCACAAGCTACCACTTAAAGACTGCGCTATTACATCTTCTGCTCAAGAAAACTTTACACTGGGAGCCTGAGCAGATTGGTTGCAGGCTCAATGATCTGTTCACTTTTCTCCTAGAGAAACTCAACGCTAAAATGCTTGACCATGTTCTAGTTGCAAACCCCCTCATTCCTTGTGTAATCGGACTCCCAAAAGAGTTCACAGAGGGAAAACCCGTTAACCTGTTTTTGCCGCTGTTGTCAGATGACAAGTTGTATTTAAAAACCAACAGACACTTGCTGGAGATGATCAAGAACATGCCAGTGCTGATACAGGAATATGGATCAGTGAGAAATGCGCTTCAACAGAACCACTTATAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-422 Predicted to be located in nuclear outer membrane. Predicted to be active in membrane. Orthologous to human ITPRIP (inositol 1,4,5-trisphosphate receptor interacting protein).

Ensembl:

ensembl_id ENSDART00000052998

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003150 lncRNA upstream 257555 49244352 ~ 49252654 (+) True XLOC_000616
TCONS_00003149 lncRNA upstream 358202 49134464 ~ 49152007 (+) True XLOC_000615
TCONS_00001049 lncRNA upstream 583160 48923328 ~ 48927049 (+) False XLOC_000614
TCONS_00003148 lncRNA upstream 583160 48924401 ~ 48927049 (+) True XLOC_000614
TCONS_00002873 lncRNA upstream 673287 48835224 ~ 48836922 (+) True XLOC_000613
TCONS_00001058 lncRNA downstream 138468 49651012 ~ 49657312 (+) False XLOC_000624
TCONS_00001063 lncRNA downstream 160937 49673481 ~ 49674004 (+) False XLOC_000624
TCONS_00001065 lncRNA downstream 160945 49673489 ~ 49674004 (+) False XLOC_000624
TCONS_00003151 lncRNA downstream 186838 49699382 ~ 49713723 (+) False XLOC_000626
TCONS_00003152 lncRNA downstream 186838 49699382 ~ 49774940 (+) False XLOC_000626
TCONS_00001053 mRNA upstream 29036 49435017 ~ 49481173 (+) False XLOC_000620
TCONS_00001052 mRNA upstream 78062 49415281 ~ 49432147 (+) True XLOC_000619
TCONS_00001051 mRNA upstream 154896 49352900 ~ 49355313 (+) True XLOC_000618
TCONS_00001050 mRNA upstream 215150 49266886 ~ 49295059 (+) True XLOC_000617
TCONS_00001048 mRNA upstream 1020175 48256950 ~ 48490034 (+) True XLOC_000612
TCONS_00001056 mRNA downstream 55791 49568335 ~ 49605854 (+) True XLOC_000622
TCONS_00001059 mRNA downstream 138472 49651016 ~ 49674006 (+) False XLOC_000624
TCONS_00001060 mRNA downstream 138478 49651022 ~ 49674003 (+) False XLOC_000624
TCONS_00001061 mRNA downstream 140423 49652967 ~ 49673888 (+) False XLOC_000624
TCONS_00001062 mRNA downstream 155879 49668423 ~ 49674006 (+) False XLOC_000624
TCONS_00001054 other upstream 37884 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001047 other upstream 1596000 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001046 other upstream 1612824 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001027 other upstream 2408413 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001025 other upstream 2414344 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001057 other downstream 78157 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001068 other downstream 187359 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001079 other downstream 618614 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001084 other downstream 1341820 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001097 other downstream 1554238 51066782 ~ 51073107 (+) False XLOC_000645

Expression Profile

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