XLOC_000626


Basic Information

Item Value
gene id XLOC_000626
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49699382 ~ 49774940 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003151
gcaccttagagctaaaatctgcaggacaccggccctcctgttTGGAGTTTGGAGACCCCgcctggactaagccgaaaggaaaatgaatggatgaaaacgATCATTCCTTCATGAAAAGTTACAGCGCTCTCTAGTGGAAACACCGGACATTAGCCTCGAGTGTAAACTATCAAAACTCCACTGGGTGTGAGATCTATCTATATTTCActgaaaaataagacttttttttcggAGGGACATCACATATCGTTGATCTAAAAAGAAAGTGGGAGCTGGTCTGGAAGAGCTTGGAGAAAAGAGGGCAAAAAACAAGGAATTCacaaaaaaagagcaaaagaaGAAGctacATCACCCGATCCCACTGCCATCTGATCACAGGCTCTGCACCAAACGGCCACATGAATAATGTTCCAAGACGGGACAGAGTGTGGTGTGCTCCCGCGGGGCTCCCACTTACTTTTGAGCGTCCTGCGACTCTTTGGTCATCACGCGGAGCGATTGAAGTTTTGGCAGCTTTGACGCTTTGCCCCGGTGATTATACACTTCATTAGAGCTGTCAGTCATTTTGGCTCCTGTGACGGAGAAGCACCACGGGGCCCCCTCAGGGCCTAATCAATGCAGCGTCCCAAGAAACAGATAACAGGGAGAGACGCGTGCTGCACGCTTCCCCCAAATGTGCCCAGATGGCTGTCATTGATCACAACACTTCTCTATCTTTGTGTAATTTATAGCATATTTAAAGCCGGTGCGTTAGTTTTGTATCGTTTTAGGAAGAACAATTGAACTAAAGAACAATTTCAATTCAGTTTAAGTTgatttatatagagcttttcaCTATTATTGCATATTACATTACAGTCAAGATCAGAAAAGTtgtgtatttaatatataaacatagttagc
>TCONS_00003152
gcaccttagagctaaaatctgcaggacaccggccctcctgttTGGAGTTTGGAGACCCCgcctggactaagccgaaaggaaaatgaatggatgaaaacgATCATTCCTTCATGAAAAGTTACAGCGCTCTCTAGTGGAAACACCGGACATTAGCCTCGAGTGTAAACTATCAAAACTCCACTGGGTGTGAGATCTATCTATATTTCActgaaaaataagacttttttttcggAGGGACATCACATATCGTTGATCTAAAAAGAAATATGAGTAATGAACAAATCTCGAACATCTGTCATCAGAAAGTGGGAGCTGGTCTGGAAGAGCTTGGAGAAAAGAGGGCAAAAAACAAGGAATTCacaaaaaaagagcaaaagaaGAAGGCTTGAGACATCTCCGTCCCTCAGGCCTGTATTGGGGGTTCTGATCTCTGCAGTTCTGGCCCAAAGGCAGCGAGCGCTGGTCTGCGGTCGACCTGTGATATATGAGCTCCAGCAGGTGCTGCTCTGACACTCAGCCTGAAGCAGGAAAGCAGAGAAAAAACTAAAACACGTGTACAGTCAGTGCATCTCACTGCAGCATCTACGGCTTGAATCAGTAGAAAAAGGCGGATGTGTTTTTCCTCCAGTGTCGTCCCTGATGGCCCTGCCTGTGACCCCTGCGTGTGTTCCTGTCCAGGAGCTGAACCGTGGCCTGAGTGCCCTTATCTTGGTCAAACTGGGCGGCGGGGGACTctttgaacacacacactcatgtccAGATGAAATCAGCCAGCGGACTGCAGGATCCATCATCATTCTCTCCAAAGCCTTTCCCAGCAGGCTTTACCGTTGAAGAGGAACCAGTCCATGACCATCAGGACCAGCAGTCACTTGTTGAAGACGCGACTGTCTTTAATGTTGTTCCAAGTGTTTGAGGCCTCACTGAGGGATGACAGAAATGACCTAAAGAAAAGCTTTAAAGGATATCCCATGATTCTCTGCGGGTCTTGGCGACACATTATGGTTCAGGTTATGTTCAAAACAACAGCATTATTCACTCGGATTGTAGACTAAACTCCCAAACTTCTTCATTTTCCTCAAGAAATGAATATATTAGTATCCAAACAGCTGTGAAAGTGATTTGGTACttcacttttaaaacattttcagacttaaaggtatagttcacccccccccccccttaaaaAACACTTGCACaccatacttaaaaaaattatgtttgatgtttgttcaaattacttatttaaatgagctgaatcaacatcttgaggttttttgggggggacaacttaattgttttacattcaagctacttaaattggtaaaaaaataataagcttAACTTAATTCATGTTTCAAGCAGAAGGAAAATGGATAAATGATTAATattagttaaagtaacataaaaagacatgttttcatgactttttgtcatatattttttacagttttcagCCAATGTATATATCTCATTTAAAAAAGACCCTTTCCACTAGTTTTGTGGTCcaaaatcatatatttttgtaatgtaaaatgtCTTTAACATTGACAAAAGAATGTAACAAGCTGGACATATCATATTAACAGCGTATTGTGTATTTTGGACTACAATGTAGTAAATAACAAAGAACAGTGTTTTAGCACACTGGATcaggagtcttctctattagtatagctgattaaccatgtgttGGAATGATAACATCCTTCTGAGAATATACCATTAGGAACAGAAGGCCCCTGCTGCCCTATATCTATctgctgataaccactgataatgcccatttaatcgagtgataacattcaaaacGTGCGGTACACAATCAACTGCCTGTCTGACATGTATttgaatgaataaacagaaaatacataTTAGATAAACTCTCAAAGCACTTTAAATGTGATCCCAAGTACGTTTGGGAGCTGGATTTCTTTGTTGTTATTTCAACCTTTGGTTTTAGTTTATTATTCCTTTTCGCAACACATGAATTTAATGTACTCCTGAAACCAGATTCCGACTCAGGACTGAAGGACATTAGCATTTGGGGCTTCAGCTCTTCCTTTTTAGTCCCTCTAGCCATTTAGACTCAAAAAAACGCCTGCTCCACCTACGAGTGAGCTGTAGGAACTGCGGCCCATGCTGCGCGGAGTCGTGTTAAGCTTCACTGATAGTATGCCAAAGTGACGCTGATCAGTCTCTTAAAAAGACAGTCACAGCGGGAATGTGAgcttttgtgtgagtgtgtgtgtgcgcgcgcagcaATTGCACAACACTAATCCCTCCATCATTAAAGAGAAGACACAGTTGACACTAAATGAGGCCCTGGTGTCAAACCCAGGTGTGGAGGTGGGCGCATAGGGGAGCAGCGGAGATCGGGTTAGGGGGAAAAAAGTGAAAAACACTGATCAGATAAGCAAAGAAAGCTCCCGCTGTATCTGCTGAAAGGAGAAATAAGTGGATGAATTCGTTAAATGGGGTCCCCGAGGAAATCGATTTGCTTTGTTGCTCGGAGGTTGCGCTTTTATATAGCTCTCGGCTGTGCTTAACCAACACCTGGATATATAACACAACCACAGCTATACAttattcagtcattcaatcattcattcattcattttcttttcagcttagtccctttattactgcGTACGAAATTGTAGGATTTTtaaaaaggcaaggcaagtttatttatatagcacatttcatacacagtgctttacataaacaagaataaaaaagacaaatttcagaaaaaaataaataaacaatagaaatgattaaaaacagattaaaatgtgttaaaacaggttataaatacttaaaaaataggaaagaacataatagtgcgatctgtcgaaCGTAGTTAACTAGTGGTTGATTACCTTCCTGttacattttctgtttattagtatttataaaatacatattctGCACGATATTATTCCACATCCCTAATCTTATCTAACACtttaacccaac
>TCONS_00001068
ATGCGCGTGCTCTATATCGATTAGCGTGATGTGGGTTTAATAACACTGACCATTTTATTCGAAATATCATTGAACATATGTGTTTATTGATACAATGAAACACAGTTTTGGTGAGTTTATTTGCATTCCAGAAGTCACAAGACTTACGCAGAAATATGAGTAATGAACAAATCTCGAACATCTGTCATCAGAAAGTGGGAGCTGGTCTGGAAGAGCTTGGAGAAAAGAGGGCAAAAAACAAGGAATTCacaaaaaaagagcaaaagaaGAAGAGCATTCCTCCAAATATTTTGAGGGAGTGAGTTGAGATGAAAAGAGCAGAACACAATGAGTCCGCTCCGTTGTTGTGGCGTCGGTGAAAGCCCTGGCTCGTCTTGTCTTTGTGTTTGCTCCGAGGG
>TCONS_00003153
AAAAAACTAAAACACGTGTACAGTCAGTGCATCTCACTGCAGCATCTACGGCTTGAATCAGTAGAAAAAGGCGGATGTGTTTTTCCTCCAGTGTCGTCCCTGATGGCCCTGCCTGTGACCCCTGCGTGTGTTCCTGTCCAGGAGCTGAACCGTGGCCTGAGTGCCCTTATCTTGGTCAAACTGGGCGGCGGGGGACTctttgaacacacacactcatgtccAGATGAAATCAGCCAGCGGACTGCAGGATCCATCATCATTCTCTCCAAAGCCTTTCCCAGCAGGCTTTACCGTTGAAGAGGAACCAGTCCATGACCATCAGGTGAAATCGGACCAAATGCTGTAAGAGGGCTAAGACCAAGAAGAGTTTTAACCATAAGAGAATCATCTGATATGTTCACCGGGAGGTCAGTGTGCTCTCTTCTGCCAAAGCGGCACGCGCTGCACATTAGCGTCAAGCATCTCACAACTGTGTCCTAACTGATTGTGGCTGCGTGTTGAGCTGTTTGGGAAGATCAGACCTGCTGTCAGTAAATCAAAGCCGGTGGTTTCCTCTCCTGTGAGACGTCTGCGCTCGGGGGCCGGCGGGTTATGAAGGAGGGATGATAAAAGACAGGTCGTAAATCAATTCTCCATCTCTATCAAAGGCATATTTCAATGCGTGTGTCTAGCGTTTAACTAGCAGTGAGGTCATAAAAAGAAAGATTTCCATCTGTATGGAAAGTGCACAGGATATGCGGTGTGCGCTCGTAGCCATATATTAATACAGTAGTCGCAGACATAGGAAGTCATGTTCAGACACAGAAGGGTGGAGGGGAAACCCCAGTGTCTTTGAGCTCTGCTTTATGTGCCGGTTCtccacaaaacaaaaaataaaaaagagcccGCTAATTGTTTTAGCAACAGATATTTGTGTGGAACAAGATTTCGTCACTCCAGAACAGGAGATTTTTCCTGCTCTGTAATTGTCTTTTAAATTTAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094063

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003151 False 903 lncRNA 0.44 3 49699382 49713723
TCONS_00003152 False 2982 lncRNA 0.40 5 49699382 49774940
TCONS_00001068 False 398 processed_transcript 0.41 3 49699903 49715822
TCONS_00003153 True 983 lncRNA 0.47 2 49737400 49743227

Neighbor

gene id symbol gene type direction distance location
XLOC_000625 si:ch211-149l1.2 coding upstream 1272 49682312 ~ 49698110 (+)
XLOC_000624 tsga10 coding upstream 25376 49651012 ~ 49674006 (+)
XLOC_000622 col17a1a coding upstream 93528 49568335 ~ 49605854 (+)
XLOC_000623 BX321880.1 coding upstream 108559 49590701 ~ 49590823 (+)
XLOC_000621 ITPRIP coding upstream 186838 49510209 ~ 49512544 (+)
XLOC_000627 lef1 coding downstream 39521 49814461 ~ 49905357 (+)
XLOC_000628 NA coding downstream 145850 49920790 ~ 49922873 (+)
XLOC_000629 gstcd coding downstream 176767 49951707 ~ 50065603 (+)
XLOC_000630 npnta coding downstream 310500 50085440 ~ 50188006 (+)
XLOC_000631 aimp1a coding downstream 518998 50293938 ~ 50319654 (+)
XLOC_000616 NA non-coding upstream 446728 49244352 ~ 49252654 (+)
XLOC_000615 NA non-coding upstream 547375 49134464 ~ 49152007 (+)
XLOC_000614 CR788248.1 non-coding upstream 772333 48923328 ~ 48927049 (+)
XLOC_000613 NA non-coding upstream 862460 48835224 ~ 48836922 (+)
XLOC_000632 NA non-coding downstream 614379 50389319 ~ 50392789 (+)
XLOC_000633 NA non-coding downstream 753194 50528134 ~ 50531694 (+)
XLOC_000637 NA non-coding downstream 958216 50733156 ~ 50808448 (+)
XLOC_000638 BX855617.1 non-coding downstream 1079424 50854364 ~ 50854478 (+)

Expression


Co-expression Network