XLOC_000628


Basic Information

Item Value
gene id XLOC_000628
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49920790 ~ 49922873 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003154
CAGACAAATATGGCTTTCCAGCAGAATATTTTATTatgcatcatttatttttattgtgcattCAAGCAGTATTTTAAAGTCAGATAATAGAAAAAGTGCGAAAATACTGTGCATATAGGACACGTGAAATTCTAGATATGAAAATAGCTTCAGCAAGACAAAGCTGGTCATTTTATTCCAAAAATTATTGATATTTGACACAGCCAAATGACATcagaaataatatgaaatatCTGAAATGACTCTTCCCGGAAATGTTCATGACTTTGAGTCAGAAAAAAAGAGTTATTCTGAAATAATAATAGAAACTTCAGGCACAGGACCGTTTTCAAGCCCATAGTTTAACattcaaaaatagttttattataataCTAAACCGTGCAATAGTTCGCATTTGAAATAATTTTCTGCTGTCATTCCACAAAATAATAGTGTTAACAGTCTGATAGTAGTACAGTAGTCAATAATCAGTCTCAAAAATGATGTGTTATTAGATTGAAAGAGTTCAAATACTTCGGTAAAAAATACCTGCTAATTAACATTTGTCTGTAGTTTGCTATCCCTGGATGTTTAATAACACTTAAAAATTGCATTaagggaccttgatctctgcaaAAAAATGAGTTTAAATAGACTATTAACAAACATTCCTGTAGCCCCAAAAGGTCaagctgtaggtgaattgaatacactgaattagccgtagtgtatgagtgagtgtgaatgtgattgGGTGTTTTCCTGTCCTGGGAAACGAACATTCAGCATATTTCTGCATATATTCTGTGAAGAAATGGCAAAAAACGAGCATATTCTGCTCATTACCTTGTTTTTTCATGATCAATATAGACGTTAGAGGTTAGGCAATATCtgaacaataaaaatagatagtgtttattttaactgcaCAAACCAGAACAAATCCAGCACAACTGAATGACACCAGTTTGGTGAGATTTTGAGGAAATGGGGCGGAAAGTGACGTCATGGCTCATGAAATATTGTGGTTATATCTAAACGAGGAAAATAAATACAGTGGTTGTTTTAACGGGACAAAACCAGCACAAATCAAGCACAAAGgaatgacacctgttttgtgctGATTTAGAGGATATGGGATGGAGAGTCACGTCACGGCTCCCAAAATATTTTGGTTATATCTAAATGAGGAAAATAGatacagtatttgttttaatgagacaaaccagcacaaatcgagCACAAAGGAATGACACCAGTTTTGTGTCATTTAGAAAacctggggtggagagtgacgtcacggccCACGAAACATTTTGGTTATATCTAAACATCGGAAACagataaagtgtttgttttatggCCACAAAGCAAGATGATCTGACAGTTcgtggatctattaaaaatgtcaggatgaactgatctgagatcgcttcgagcgttgtgaaggacagatctatccatcctcgaaatcatgatcagcaatgcaatgattggctgacggcacagcagcgtaatgacatcatctgattattattcaattatccatgtgagcaaaattacatcaaattagcagtaaagggtttgttaaatatgacaagcaataactttacacctttgttttgagctgcaggctttacactttcatgtgtcaagagtattcatcatgtatttcaatgcatctcaatgtatttagttctacatttagagaagattttctttattattgtagcctaggcctactcaagttttAATCTGCATAGAGaaaaactgtataaattaattttgcatcaaaaaagcatttgatAAAGGTAAACATTTGATAAAcgtttgtgaagcatcaaatcatcaGAATATTAGCAGTCAAAACACGTGCATGACAGCataaattattatctttttttaaaaaaaaaatattgtgcatgtacaagtttgtatctaaaaagttcatatcaataaattttctttttgaaccaccaggtggcagtcttttacttttacttctgaGTGCAGATTGCACaagtttttttaatatgtattttttaa

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0046460 neutral lipid biosynthetic process biological_process
GO:0046463 acylglycerol biosynthetic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen molecular_function
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003154 True 2025 lncRNA 0.34 2 49920790 49922873

Neighbor

gene id symbol gene type direction distance location
XLOC_000627 lef1 coding upstream 15433 49814461 ~ 49905357 (+)
XLOC_000626 NA coding upstream 145850 49699382 ~ 49774940 (+)
XLOC_000625 si:ch211-149l1.2 coding upstream 222680 49682312 ~ 49698110 (+)
XLOC_000624 tsga10 coding upstream 246784 49651012 ~ 49674006 (+)
XLOC_000622 col17a1a coding upstream 314936 49568335 ~ 49605854 (+)
XLOC_000629 gstcd coding downstream 28834 49951707 ~ 50065603 (+)
XLOC_000630 npnta coding downstream 162567 50085440 ~ 50188006 (+)
XLOC_000631 aimp1a coding downstream 371065 50293938 ~ 50319654 (+)
XLOC_000632 NA coding downstream 466446 50389319 ~ 50392789 (+)
XLOC_000633 NA coding downstream 605261 50528134 ~ 50531694 (+)
XLOC_000623 BX321880.1 non-coding upstream 329967 49590701 ~ 49590823 (+)
XLOC_000616 NA non-coding upstream 668136 49244352 ~ 49252654 (+)
XLOC_000615 NA non-coding upstream 768783 49134464 ~ 49152007 (+)
XLOC_000614 CR788248.1 non-coding upstream 993741 48923328 ~ 48927049 (+)
XLOC_000637 NA non-coding downstream 810283 50733156 ~ 50808448 (+)
XLOC_000638 BX855617.1 non-coding downstream 931491 50854364 ~ 50854478 (+)
XLOC_000640 NA non-coding downstream 1020719 50943592 ~ 50953558 (+)

Expression


Co-expression Network