XLOC_000625 (si:ch211-149l1.2)


Basic Information

Item Value
gene id XLOC_000625
gene name si:ch211-149l1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49682312 ~ 49698110 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001066
TCTTAAACTTCATTTTGCAGATGTCAGAGATCTAACACTATCGAGGACTTGAGACcaccagcaaaacaaaaaaacaaaaaaaaaaacataggaagCTCTCAGACGAGGGAGATCGTTCTGCATCAACTTAAAGCTGCTGGATTAAAACATGGAATCAATCCCTGTCGACATGGACAAGAATGCAGAGGAACTCACAGGAAGGAAGAAGTCTCGTTTTAAGCAGCTGAAGACTCGTCTCTTTGGGAAGCTGAAGAAGAAGGAAAGCGAAGGGCTAATCAAGCAGAGTCAGTCCGCTAGTGACATCAACGCTCCAGACAGCAGAAGAGGAGGAGACGACTCTGAAGATGAGTTCACGTATCCACAGGGTCTGAGCCCCAGAGCGCTGTCTCATGATAGCATCTTCTTCACGGATCAAACCCAGAGCACAGAACCCACACGAGTGCTTTCACAAGAGAACGTTCACGGCAAAATTAAAGCCTTACAACTAAAACTACAACAGCAGAACTTACATCTGGGTCCTCCTCCAATGCTGATTCCTGGAAAGCGCACAG
>TCONS_00001067
ACTCTGATCAGCTGACTTCTAAACACAAGACACGCAGCAGAAGCTCCTCCATGATGTCTGGTGTTTAAGTTTGTAATTTCTATATttaatgtctattttttttttatttattttgatctgCAGGATTAAAACATGGAATCAATCCCTGTCGACATGGACAAGAATGCAGAGGAACTCACAGGAAGGAAGAAGTCTCGTTTTAAGCAGCTGAAGACTCGTCTCTTTGGGAAGCTGAAGAAGAAGGAAAGCGAAGGGCTAATCAAGCAGAGTCAGTCCGCTAGTGACATCAACGCTCCAGACAGCAGAAGAGGAGGAGACGACTCTGAAGATGAGTTCACGTATCCACAGGGTCTGAGCCCCAGAGCGCTGTCTCATGATAGCATCTTCTTCACGGATCAAACCCAGAGCACAGAACCCACACGAGTGCTTTCACAAGAGAACGTTCACGGCAAAATTAAAGCCTTACAACTAAAACTACAACAGCAGAACTTACATCTGGGTCCTCCTCCAATGCTGATTCCTGGAAAGCGCACAGAGGACTCGGGAGCCACTTCAGAGGATGATGGTTTACCTTGCAGCCCACCGGAAACCTACTTGTATGAGCGAGTGATGCATGGAGGCATTTACAAGTATCCCGAACCTCGGAAACATCTGAGCTCTTTGAGTTTAGCAGGAACAGGAAGTGAAGAAGAAGAACAGGGTGATCTTTTCCAGTCCTCATCCAGGCCACTCTCCCCAGTCTTCAAGCCATCCTCTCAGTCAATCATCTGCTCTAGCTCATCATTGGCCACGCCCACTGTAGGTGTTGACTTCAGTAGTCCTGCATCTTACACAGCCACACTGGATAACTCCGCTGCCCACCATCGCATGTCCGTCAAACCGAGAAACCAGCGCGCCAGTACAAGAGGAAACAGAGGGCCTGCGGTATCCATTTCTCCCAGGAAACGTTCAGAAAGCATCAGTGATTTGGACAGCATACTGTCTgagaaagatgatgatgatgatgatgaggttgATGATGAAATTATGACATCCACAGAGACAGTGCATCATCTTTCACATTCCCCTCCGACTGTGGAGATAAAAGTAGAAACCACTATTCCAGAAGCTCCAGAAACACCAGTGCAGATCCAGGAGGAGGACGAGGAGAAGCTCAGCACACCTCATTTAACACCTCTGAGTGCTGAAATCCTAAAATCACAAGAGTCTCTCGAACCTGAAGGAAAACTCACCATGAATCCTCTTTATTTGCAGCCAATGCCCTTCGGCTCAGGTCCACCGTCACCTTCAGGTCTTCCAGAAGTGCATTTAATAGAAGCAGagtcattcattcagaaagacgGCATGCATGATATACAGATTGTTGCAAAGGAAAGCATGAAAGAGGAACCATCAACTAGGTTTCATCCAGTGCCTTTACCTCGAGCCAAAAAGCCAAAAGTGGAGATAAAGAGCCCTCCATCTCCGAAAGCATCCACAGAATCAGTATCGCTACAGTTTTTGCTAGCATCTGCTAAAAATCGCTCCAAAACAAACAACGATGCAACACTGAATGAAGGAGATCTTAAAATGAAGATGCAAACTATTAACTCCAACCTAGAGGTGCTTAAAGatgaagaaaaagagacaaaaccaGTGGAGAATCTTCTCTATCGTATGCAGAAATCGATAGAGAAGATCGAAGATACAAAGAGCATTCGTAGAGAAGCTCCTGCACCTCCTGTCATGTCTAAACTAGCACCAGGAACTAATGGTAAGAAGGTCGATTCGCCTACAGAAAACGTGGACAGTGAAAAGCAAGAGGAACCCGAGGAGCGGAGGAGTGCTTTCGGGGTGCATCTCCGCACAACCTCTCTGTCGCTGAAATATCGCTCGGAGGTGTCCAGGATGAAGGACGAAACCAAACGCTACAGTTTAGAGTCTAGTACAGTGCTGGCGGACTCAGAAGAGCATGCTGGGAAAGCTGAGGTGTTCAGGGGTGCAAGTGACAGCAGTTTTAGGAGTAAAGCCAAGAAACAGGATCCACAGAGTCTGGAGACTCCGCTCGTTGCACAAGACTACGGAAGATCGTCCATCCAAAATACAACCGGGACATGTAAAGAGGCCGAGCCAGATTGGATGAGTCTTGCCAGGGAGAAAACCAGAGCGTACCAGCCATTAATGAGCAGATTCTCTACAAACCAGTCATCGGTTCAACCTTCACCTCCCGCACAGGCTACCAAACCAGCCTTACAGCCTAAAACACAGACATTGACCACCACTGTGCTTCATCCACTGAAAACACAGCCAATCCAGAGCAGCAGCCAACAGAGCGCACACAAACCTGCTGTTAAACCAACACCCGCGGGACCAAAAGACAAGCCGCAGGACAACAGTAGGAACAATACCACCGAAGATGACACGACAAAGAGAACAGCGACTATTAGTAAGATGGATTTCAATGCAAGACCTGTTCCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000079501

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001066 False 551 mRNA 0.46 5 49682312 49688385
TCONS_00001067 True 2458 mRNA 0.47 9 49686408 49698110

Neighbor

gene id symbol gene type direction distance location
XLOC_000624 tsga10 coding upstream 8306 49651012 ~ 49674006 (+)
XLOC_000622 col17a1a coding upstream 76458 49568335 ~ 49605854 (+)
XLOC_000623 BX321880.1 coding upstream 91489 49590701 ~ 49590823 (+)
XLOC_000621 ITPRIP coding upstream 169768 49510209 ~ 49512544 (+)
XLOC_000620 pdcd11 coding upstream 201139 49435017 ~ 49481173 (+)
XLOC_000626 NA coding downstream 1272 49699382 ~ 49774940 (+)
XLOC_000627 lef1 coding downstream 116351 49814461 ~ 49905357 (+)
XLOC_000628 NA coding downstream 222680 49920790 ~ 49922873 (+)
XLOC_000629 gstcd coding downstream 253597 49951707 ~ 50065603 (+)
XLOC_000630 npnta coding downstream 387330 50085440 ~ 50188006 (+)
XLOC_000616 NA non-coding upstream 429658 49244352 ~ 49252654 (+)
XLOC_000615 NA non-coding upstream 530305 49134464 ~ 49152007 (+)
XLOC_000614 CR788248.1 non-coding upstream 755263 48923328 ~ 48927049 (+)
XLOC_000613 NA non-coding upstream 845390 48835224 ~ 48836922 (+)
XLOC_000632 NA non-coding downstream 691209 50389319 ~ 50392789 (+)
XLOC_000633 NA non-coding downstream 830024 50528134 ~ 50531694 (+)
XLOC_000637 NA non-coding downstream 1035046 50733156 ~ 50808448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000301_00056530_00064002 NA coding CI01000301 null 56082 ~ 64320 (+)