RNA id: TCONS_00001067


Basic Information

Item Value
RNA id TCONS_00001067
length 2458
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_000625
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49682312 ~ 49698110 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTGATCAGCTGACTTCTAAACACAAGACACGCAGCAGAAGCTCCTCCATGATGTCTGGTGTTTAAGTTTGTAATTTCTATATttaatgtctattttttttttatttattttgatctgCAGGATTAAAACATGGAATCAATCCCTGTCGACATGGACAAGAATGCAGAGGAACTCACAGGAAGGAAGAAGTCTCGTTTTAAGCAGCTGAAGACTCGTCTCTTTGGGAAGCTGAAGAAGAAGGAAAGCGAAGGGCTAATCAAGCAGAGTCAGTCCGCTAGTGACATCAACGCTCCAGACAGCAGAAGAGGAGGAGACGACTCTGAAGATGAGTTCACGTATCCACAGGGTCTGAGCCCCAGAGCGCTGTCTCATGATAGCATCTTCTTCACGGATCAAACCCAGAGCACAGAACCCACACGAGTGCTTTCACAAGAGAACGTTCACGGCAAAATTAAAGCCTTACAACTAAAACTACAACAGCAGAACTTACATCTGGGTCCTCCTCCAATGCTGATTCCTGGAAAGCGCACAGAGGACTCGGGAGCCACTTCAGAGGATGATGGTTTACCTTGCAGCCCACCGGAAACCTACTTGTATGAGCGAGTGATGCATGGAGGCATTTACAAGTATCCCGAACCTCGGAAACATCTGAGCTCTTTGAGTTTAGCAGGAACAGGAAGTGAAGAAGAAGAACAGGGTGATCTTTTCCAGTCCTCATCCAGGCCACTCTCCCCAGTCTTCAAGCCATCCTCTCAGTCAATCATCTGCTCTAGCTCATCATTGGCCACGCCCACTGTAGGTGTTGACTTCAGTAGTCCTGCATCTTACACAGCCACACTGGATAACTCCGCTGCCCACCATCGCATGTCCGTCAAACCGAGAAACCAGCGCGCCAGTACAAGAGGAAACAGAGGGCCTGCGGTATCCATTTCTCCCAGGAAACGTTCAGAAAGCATCAGTGATTTGGACAGCATACTGTCTgagaaagatgatgatgatgatgatgaggttgATGATGAAATTATGACATCCACAGAGACAGTGCATCATCTTTCACATTCCCCTCCGACTGTGGAGATAAAAGTAGAAACCACTATTCCAGAAGCTCCAGAAACACCAGTGCAGATCCAGGAGGAGGACGAGGAGAAGCTCAGCACACCTCATTTAACACCTCTGAGTGCTGAAATCCTAAAATCACAAGAGTCTCTCGAACCTGAAGGAAAACTCACCATGAATCCTCTTTATTTGCAGCCAATGCCCTTCGGCTCAGGTCCACCGTCACCTTCAGGTCTTCCAGAAGTGCATTTAATAGAAGCAGagtcattcattcagaaagacgGCATGCATGATATACAGATTGTTGCAAAGGAAAGCATGAAAGAGGAACCATCAACTAGGTTTCATCCAGTGCCTTTACCTCGAGCCAAAAAGCCAAAAGTGGAGATAAAGAGCCCTCCATCTCCGAAAGCATCCACAGAATCAGTATCGCTACAGTTTTTGCTAGCATCTGCTAAAAATCGCTCCAAAACAAACAACGATGCAACACTGAATGAAGGAGATCTTAAAATGAAGATGCAAACTATTAACTCCAACCTAGAGGTGCTTAAAGatgaagaaaaagagacaaaaccaGTGGAGAATCTTCTCTATCGTATGCAGAAATCGATAGAGAAGATCGAAGATACAAAGAGCATTCGTAGAGAAGCTCCTGCACCTCCTGTCATGTCTAAACTAGCACCAGGAACTAATGGTAAGAAGGTCGATTCGCCTACAGAAAACGTGGACAGTGAAAAGCAAGAGGAACCCGAGGAGCGGAGGAGTGCTTTCGGGGTGCATCTCCGCACAACCTCTCTGTCGCTGAAATATCGCTCGGAGGTGTCCAGGATGAAGGACGAAACCAAACGCTACAGTTTAGAGTCTAGTACAGTGCTGGCGGACTCAGAAGAGCATGCTGGGAAAGCTGAGGTGTTCAGGGGTGCAAGTGACAGCAGTTTTAGGAGTAAAGCCAAGAAACAGGATCCACAGAGTCTGGAGACTCCGCTCGTTGCACAAGACTACGGAAGATCGTCCATCCAAAATACAACCGGGACATGTAAAGAGGCCGAGCCAGATTGGATGAGTCTTGCCAGGGAGAAAACCAGAGCGTACCAGCCATTAATGAGCAGATTCTCTACAAACCAGTCATCGGTTCAACCTTCACCTCCCGCACAGGCTACCAAACCAGCCTTACAGCCTAAAACACAGACATTGACCACCACTGTGCTTCATCCACTGAAAACACAGCCAATCCAGAGCAGCAGCCAACAGAGCGCACACAAACCTGCTGTTAAACCAACACCCGCGGGACCAAAAGACAAGCCGCAGGACAACAGTAGGAACAATACCACCGAAGATGACACGACAAAGAGAACAGCGACTATTAGTAAGATGGATTTCAATGCAAGACCTGTTCCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140824

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001063 lncRNA upstream 12404 49673481 ~ 49674004 (+) False XLOC_000624
TCONS_00001065 lncRNA upstream 12404 49673489 ~ 49674004 (+) False XLOC_000624
TCONS_00001058 lncRNA upstream 29096 49651012 ~ 49657312 (+) False XLOC_000624
TCONS_00003150 lncRNA upstream 433754 49244352 ~ 49252654 (+) True XLOC_000616
TCONS_00003149 lncRNA upstream 534401 49134464 ~ 49152007 (+) True XLOC_000615
TCONS_00003151 lncRNA downstream 1272 49699382 ~ 49713723 (+) False XLOC_000626
TCONS_00003152 lncRNA downstream 1272 49699382 ~ 49774940 (+) False XLOC_000626
TCONS_00003153 lncRNA downstream 39290 49737400 ~ 49743227 (+) True XLOC_000626
TCONS_00003154 lncRNA downstream 222680 49920790 ~ 49922873 (+) True XLOC_000628
TCONS_00003155 lncRNA downstream 691209 50389319 ~ 50392789 (+) False XLOC_000632
TCONS_00001059 mRNA upstream 12402 49651016 ~ 49674006 (+) False XLOC_000624
TCONS_00001062 mRNA upstream 12402 49668423 ~ 49674006 (+) False XLOC_000624
TCONS_00001064 mRNA upstream 12404 49673489 ~ 49674004 (+) True XLOC_000624
TCONS_00001060 mRNA upstream 12405 49651022 ~ 49674003 (+) False XLOC_000624
TCONS_00001061 mRNA upstream 12520 49652967 ~ 49673888 (+) False XLOC_000624
TCONS_00001069 mRNA downstream 116351 49814461 ~ 49903487 (+) False XLOC_000627
TCONS_00001070 mRNA downstream 116832 49814942 ~ 49905357 (+) False XLOC_000627
TCONS_00001071 mRNA downstream 179890 49878000 ~ 49886512 (+) True XLOC_000627
TCONS_00001072 mRNA downstream 253597 49951707 ~ 49961195 (+) False XLOC_000629
TCONS_00001073 mRNA downstream 253598 49951708 ~ 50065603 (+) False XLOC_000629
TCONS_00001057 other upstream 95585 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001054 other upstream 214083 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001047 other upstream 1772199 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001046 other upstream 1789023 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001027 other upstream 2584612 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001068 other downstream 1793 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001079 other downstream 433048 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001084 other downstream 1156254 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001097 other downstream 1368672 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001111 other downstream 1767358 51465468 ~ 51465582 (+) True XLOC_000651

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000301_00056530_00064002.mRNA True 3346 mRNA 0.44 10 CI01000301 56082 ~ 64320 (+)