RNA id: TCONS_00003153


Basic Information

Item Value
RNA id TCONS_00003153
length 983
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_000626
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49699382 ~ 49774940 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAACTAAAACACGTGTACAGTCAGTGCATCTCACTGCAGCATCTACGGCTTGAATCAGTAGAAAAAGGCGGATGTGTTTTTCCTCCAGTGTCGTCCCTGATGGCCCTGCCTGTGACCCCTGCGTGTGTTCCTGTCCAGGAGCTGAACCGTGGCCTGAGTGCCCTTATCTTGGTCAAACTGGGCGGCGGGGGACTctttgaacacacacactcatgtccAGATGAAATCAGCCAGCGGACTGCAGGATCCATCATCATTCTCTCCAAAGCCTTTCCCAGCAGGCTTTACCGTTGAAGAGGAACCAGTCCATGACCATCAGGTGAAATCGGACCAAATGCTGTAAGAGGGCTAAGACCAAGAAGAGTTTTAACCATAAGAGAATCATCTGATATGTTCACCGGGAGGTCAGTGTGCTCTCTTCTGCCAAAGCGGCACGCGCTGCACATTAGCGTCAAGCATCTCACAACTGTGTCCTAACTGATTGTGGCTGCGTGTTGAGCTGTTTGGGAAGATCAGACCTGCTGTCAGTAAATCAAAGCCGGTGGTTTCCTCTCCTGTGAGACGTCTGCGCTCGGGGGCCGGCGGGTTATGAAGGAGGGATGATAAAAGACAGGTCGTAAATCAATTCTCCATCTCTATCAAAGGCATATTTCAATGCGTGTGTCTAGCGTTTAACTAGCAGTGAGGTCATAAAAAGAAAGATTTCCATCTGTATGGAAAGTGCACAGGATATGCGGTGTGCGCTCGTAGCCATATATTAATACAGTAGTCGCAGACATAGGAAGTCATGTTCAGACACAGAAGGGTGGAGGGGAAACCCCAGTGTCTTTGAGCTCTGCTTTATGTGCCGGTTCtccacaaaacaaaaaataaaaaagagcccGCTAATTGTTTTAGCAACAGATATTTGTGTGGAACAAGATTTCGTCACTCCAGAACAGGAGATTTTTCCTGCTCTGTAATTGTCTTTTAAATTTAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003151 lncRNA upstream 23677 49699382 ~ 49713723 (+) False XLOC_000626
TCONS_00001063 lncRNA upstream 63396 49673481 ~ 49674004 (+) False XLOC_000624
TCONS_00001065 lncRNA upstream 63396 49673489 ~ 49674004 (+) False XLOC_000624
TCONS_00001058 lncRNA upstream 80088 49651012 ~ 49657312 (+) False XLOC_000624
TCONS_00003150 lncRNA upstream 484746 49244352 ~ 49252654 (+) True XLOC_000616
TCONS_00003154 lncRNA downstream 177563 49920790 ~ 49922873 (+) True XLOC_000628
TCONS_00003155 lncRNA downstream 646092 50389319 ~ 50392789 (+) False XLOC_000632
TCONS_00003156 lncRNA downstream 646139 50389366 ~ 50392789 (+) True XLOC_000632
TCONS_00003157 lncRNA downstream 784907 50528134 ~ 50531694 (+) True XLOC_000633
TCONS_00003158 lncRNA downstream 989929 50733156 ~ 50808448 (+) True XLOC_000637
TCONS_00001067 mRNA upstream 39290 49686408 ~ 49698110 (+) True XLOC_000625
TCONS_00001066 mRNA upstream 49015 49682312 ~ 49688385 (+) False XLOC_000625
TCONS_00001062 mRNA upstream 63394 49668423 ~ 49674006 (+) False XLOC_000624
TCONS_00001064 mRNA upstream 63396 49673489 ~ 49674004 (+) True XLOC_000624
TCONS_00001061 mRNA upstream 63512 49652967 ~ 49673888 (+) False XLOC_000624
TCONS_00001069 mRNA downstream 71234 49814461 ~ 49903487 (+) False XLOC_000627
TCONS_00001070 mRNA downstream 71715 49814942 ~ 49905357 (+) False XLOC_000627
TCONS_00001071 mRNA downstream 134773 49878000 ~ 49886512 (+) True XLOC_000627
TCONS_00001072 mRNA downstream 208480 49951707 ~ 49961195 (+) False XLOC_000629
TCONS_00001073 mRNA downstream 208481 49951708 ~ 50065603 (+) False XLOC_000629
TCONS_00001068 other upstream 21578 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001057 other upstream 146577 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001054 other upstream 265075 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001047 other upstream 1823191 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001046 other upstream 1840015 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001079 other downstream 387931 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001084 other downstream 1111137 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001097 other downstream 1323555 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001111 other downstream 1722241 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001119 other downstream 1940292 51683519 ~ 51683618 (+) True XLOC_000655

Expression Profile

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