RNA id: TCONS_00001069


Basic Information

Item Value
RNA id TCONS_00001069
length 2866
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_000627
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49814461 ~ 49905357 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGTCAGTCAGAGATCAGGGGGAGGAGTACAGCACTACACTCTCTCCAGCCCAACATTACTCTCAGTCTCTGCTGAGCTCATTTCTGAAGAGGGACACCTTTTTTACCCAACAAACCAAACGGGAATGACACACACCATCTGAACTccaacatttctttttttgttgttgttgcttttattttgaaacaagtgaaacTGTCCTTTTCTGAACTTTAAGTTCCAACTTTTTCCTTCCACCAAAGGATTCGTATTTTAACTTTTTCCCCAAACCCGCTATTTTTCTTCCTCTGGATTCCCGAGAGTTTTTCCACcggacgcgcgcgctcttgttaCCGTAAACCAAACACACTCACGCGCGCGTGTTCGGAGTGCGCGAGCTGACCAGAAACAAAACAACTATACGGGGGGTTTAATTTCAATTGCACGCGTTTGCGTCCCTGGCGTTTGTAGGGTGAGGAGGACTTTCATTCACCCGAGAAATGCCGCAGTTGTCAGGTGGAGGAGGCGGCGGGGACCCGGAGCTCTGCGCCACCGATGAAATGATCCCGTTCAAAGACGAGGGAGACCCGCACAAGGAGCAAATCTTCGCGGAGATCAGCCACTCCGAGGAGGAGGGAGACTTAGCGGAGATCAAATCATCTCTGGTCAACGAGACAGAAATCAGTCCCAACAGTAACAGTCACGACGCAGCTAGACAGTCCCAAATAACACCAGACTCTTACCATGAGAAGCACAGGGACCATCCGGATGATGGCAAACTCCAAGACTTGTACAGCAAAGGCCACCCGTACCCGAGTTATCCCGGATACATCATGATGACCAATATGAACAATGAACCCTACATGAACAACGGCTCTCTCTCGCCTCCCATTCCCAGAACGTCGAATAAGGTGCCGGTGGTCCAGCCGTCCCATGCCGTTCACCCACTCACCCCTCTGATCACATACAGTGACGAGCACTTCGCCCCCGGCCCACATTCGGGACACCACCCACAGGATGTCAACCCCAAGCAAGCAGGTATGCCCAGGCATCATCCTGGACCAGACATTCCCAATTTCTATCCCCTTTCCCCGGGGGGAGTTGGACAGATGACCCCTCCTCTGGGTTGGTTCTCACATCACATGGTACCAGGCCCTCCTGGACCCCACGCCACAGGAATCCCCCATCCAGCCATTGTCAACCCACAGGTGAAACAGGAGCACGACACAGACCTGATGCACATGAAACCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAAAGACCTCACATCAAGAAACCTCTAAACGCTTTCATGCTGTATATGAAAGAGATGCGCGCCAATGTGGTGGCCGAATGCACGCTGAAGGAGAGCGCCGCTATCAATCAGATCCTCGGCCGGAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCTAAGTATTACGAATTAGCCCGCAAGGAACGGCAGCTCCATATGCAGCTTTACCCAGGATGGTCTGCCAGAGACAATTATggaaagaaaaaaaagcggAAGAGGGAAAAGATCCAGGAACCTGCTTCAGGTACAGGCCAGAGAATGAAAACGGCGTACATCTGAACAATGGAGGAAAGCGGACGTCTTTTTCCTCTTGCAAAGCAAAGACAGCAGCTACAGGCCCCCTTTTAGAGATGGAAGCCTGCTAGACTTCTCAACCTTTCACCCCCCTCATCACCTCTCGACCCCAGTGGGATTCACCGAGGGTCCCGGTCCTCGAATCTGCTCCTCGGCTGCAGGCGCTGCTGTAGAGACATTGAACTGAGAAACAGACAATCACTAACGCAGACCCGTGAACACCTTCCTTTCGTTGTCTTTAATTCACTCCCGAAGCCGAAGGCGTTGCACTGATTATGTTCCTCGACCGTTTGTAAAGCGCACATATGGCcacatgtaaacaaacacacacacacacacacgttcctaCACCTGTCCCTAAGTTATTCTAAGTTATTTGGCACCTGTGTGTTCACTATGTCCACTCGCTCACTTGCTTTCGCGCCCTTAAAATGTAGCATCGCAGGGGCTGACGCAGTTTTAGGGATCACACGTTTCCATTTTCTTCACAGACATTGGTGTAACAAAAAAAGGATCAATGTTTTTGATTTCTCCTCGACATCTTGGGTTCATGTTTATTTTGAATGcttttcgttgttgttgttattattattctttattttcatttctcggtgtatattttattgattttcttttttatcattattttttatatatataaatatatatataatggaatATGAAAATAAGCTTGGAGACAGGAAAGCCATTTTTCTTGTTGAAGCGTCTCGCAGAAATAACGTTCTTTTTGATAACTATTTGTAAACGGATATCGACTTCTCAGTCTCGCGCAGGTGTAAAATAATGCTCaatgtgtactttttaaaaagagaTGTCTGGATGTCACTTTTCCTCTGTATTTTTGCAGGCAACATTAGGACAAAGGTGAAAGAGTAGGTACCCAGAGGCCTATATTTTATTGATCTAAATTGACAAATGAAGcagatatatatctatatatatttaccCCAGCACTTGGCAGTCTTTCTTTAATGGCAAATGTACCtctgtcctctctctctctctctctctggtagGTAATAGAGTGGTCTTTTACCATGTTTATTCCATGCAAACATTTCCAcattttatcttttttaattGTTCTCTTTTAGCATTTTcagatgatgttttttttttttttttttttttttacattcattgtCATATTTTGAATCGTTAACTTGGTGTAGCATTTTGCTTCCAAGTGGTCACATTCGAACTGTTTCAACGTCTTTTTTATGGAAATAAATAGGCATCTTTGACTGAAAA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0048747 muscle fiber development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001755 neural crest cell migration biological_process
GO:0001756 somitogenesis biological_process
GO:0021854 hypothalamus development biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0031101 fin regeneration biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0048916 posterior lateral line development biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0048922 posterior lateral line neuromast deposition biological_process
GO:0060784 regulation of cell proliferation involved in tissue homeostasis biological_process
GO:0021979 hypothalamus cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0033333 fin development biological_process
GO:0033334 fin morphogenesis biological_process
GO:0033336 caudal fin development biological_process
GO:0033339 pectoral fin development biological_process
GO:0022008 neurogenesis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0008013 beta-catenin binding molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0045295 gamma-catenin binding molecular_function
GO:0030331 estrogen receptor binding molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway
ko04390 Hippo signaling pathway
ko04520 Adherens junction
ko04916 Melanogenesis
ko05200 Pathways in cancer
ko05210 Colorectal cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05216 Thyroid cancer
ko05221 Acute myeloid leukemia
ko05217 Basal cell carcinoma
ko05215 Prostate cancer
ko05213 Endometrial cancer
ko05224 Breast cancer
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05132 Salmonella infection
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko04934 Cushing syndrome
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-990714-26 Enables sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; fin development; and fin regeneration. Predicted to be located in nucleus. Predicted to be part of beta-catenin-TCF complex. Is expressed in several structures, including midbrain hindbrain boundary neural rod; nervous system; neural crest; pleuroperitoneal region; and trunk. Used to study anxiety disorder. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human LEF1 (lymphoid enhancer binding factor 1).

Ensembl:

ensembl_id ENSDART00000132405

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003152 lncRNA upstream 39521 49699382 ~ 49774940 (+) False XLOC_000626
TCONS_00003153 lncRNA upstream 71234 49737400 ~ 49743227 (+) True XLOC_000626
TCONS_00003151 lncRNA upstream 100738 49699382 ~ 49713723 (+) False XLOC_000626
TCONS_00001063 lncRNA upstream 140457 49673481 ~ 49674004 (+) False XLOC_000624
TCONS_00001065 lncRNA upstream 140457 49673489 ~ 49674004 (+) False XLOC_000624
TCONS_00003154 lncRNA downstream 17303 49920790 ~ 49922873 (+) True XLOC_000628
TCONS_00003155 lncRNA downstream 485832 50389319 ~ 50392789 (+) False XLOC_000632
TCONS_00003156 lncRNA downstream 485879 50389366 ~ 50392789 (+) True XLOC_000632
TCONS_00003157 lncRNA downstream 624647 50528134 ~ 50531694 (+) True XLOC_000633
TCONS_00003158 lncRNA downstream 829669 50733156 ~ 50808448 (+) True XLOC_000637
TCONS_00001067 mRNA upstream 116351 49686408 ~ 49698110 (+) True XLOC_000625
TCONS_00001066 mRNA upstream 126076 49682312 ~ 49688385 (+) False XLOC_000625
TCONS_00001059 mRNA upstream 140455 49651016 ~ 49674006 (+) False XLOC_000624
TCONS_00001062 mRNA upstream 140455 49668423 ~ 49674006 (+) False XLOC_000624
TCONS_00001064 mRNA upstream 140457 49673489 ~ 49674004 (+) True XLOC_000624
TCONS_00001072 mRNA downstream 48220 49951707 ~ 49961195 (+) False XLOC_000629
TCONS_00001073 mRNA downstream 48221 49951708 ~ 50065603 (+) False XLOC_000629
TCONS_00001074 mRNA downstream 52382 49955869 ~ 49960764 (+) True XLOC_000629
TCONS_00001075 mRNA downstream 181953 50085440 ~ 50188006 (+) False XLOC_000630
TCONS_00001076 mRNA downstream 181984 50085471 ~ 50132011 (+) False XLOC_000630
TCONS_00001068 other upstream 98639 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001057 other upstream 223638 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001054 other upstream 342136 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001047 other upstream 1900252 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001046 other upstream 1917076 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001079 other downstream 227671 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001084 other downstream 950877 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001097 other downstream 1163295 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001111 other downstream 1561981 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001119 other downstream 1780032 51683519 ~ 51683618 (+) True XLOC_000655

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000301_00136561_00171689.mRNA True 1068 mRNA 0.55 9 CI01000301 136561 ~ 171689 (+)