RNA id: TCONS_00001060


Basic Information

Item Value
RNA id TCONS_00001060
length 1526
RNA type mRNA
GC content 0.49
exon number 12
gene id XLOC_000624
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49651012 ~ 49674006 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCAGGGTAAAGAGCTTGTTGAGATTTACTTTAACACGCTTGCTTTCGTTTACCAGACCCACTAGAAGAGGGGGCAGCAGAAACCGTCAAAACTGGGTCAGAGAGCCTGTGGTGATAACCCTGGTAGCTGTTGCTTTATGCTATAAACGCTAGGTTAATCTTTTAAAGAGGAACTGTAAGAGATGTTGAGGCCTCGTCGCTCCACCAGCCCTGTCAAAGGGGCATCGACTCACCGCAGTCCTGTCAGACACTCACCTGTTAAAgGCGGCTCATTTGATTCAGAGCTGATGAGGGTGTTACGAGAAAGAGATGAGCTGCAGAACATGCTGGACAAACATGAGCGGCATCTCTCAGAGACCCAGGCCAATGTTAAAGTGCTCACAGCTGAGAGACGATCTTGACAGAGCACATCAGGAAAATCAGACTCTAAAGTTCAAGCTGGATGAAGCGAATCTGGAAATAGAGGACTTGCAGAAAAAAGTACAAGATCACATCGCAGACATCTCACGTACTGAAGATCTGCTGTCTGCCAAGGAGCGTGAGTGTAGAGAACTGCAAGAGTCTCGAAGGAAAGAGTCTATTCTGGTGGAAAGCTGGGAGGACCAGGCCAGACGCGCTGAAACCACAGTCATCGAACTCCGTCTTGAGCTTCACAATGCTAATTCGGAGATACTTCGACTCAAAGAAAGAGCAGACAGTCTGGAGAACAGACTCCAACAGGCACTGAGTGCGGAGAGAAGCTGCACTAGTCAGCTGTCTCAGTTAAACCGAAAGATGATTCACATGGAGGAGGATCTGTGTCAGGCGCGGGCTGAGCACACGCAGGCACAGGCCGACCTGGAAAAAACACGAGAGCTCTGTGTCAAACTGGATGCCAGCAAAGACGCTGTGCAGCGTGAGCTGGAATCCTGCTGCTCTGAGATCGAGCTGTTACAGAAGCAGCTGACCAGTGAACGTCTGTCTGTACAGACTCTGGAGAGCCTGCTGGTGTCCACAAGAGAAAAAGAGCTACAGAGGCAACTCACCTCTCAGGAAAGACAGACTGAAATAGAAATCCTTAAGGACAAACTTAGCATGGCTGACAGTAAAGCGAATTCTCAGAGCAGAGAAATGGCTCAGCTGAAGACACGATCATGCCAGCTGGAGGCAGATCTGGAGATGACCAAGAGACATCTGTCTACTGAACGCTTCGAAAGGGAGCGAGCAGTTCAGGAGCTGCGCAGACAGGGTCTCTCTGCCATTTCTCCTGTCCTCACCTCCACAATGCGCTCCTCGTCTTCATCCCATCGTCGCTCTCTGAGTCCTCACAGATCCTGGTCTCCTGAACACTCTCACCTCAGCACCCCTGACCCACTGCTGCTGTCTCACTATCCAGACAGGAATCTAACTTTTAGGGACCTTCACGACTGAGACACCAAACTTCTATCAGTCTTGGATTTACTCTGAAGACAATCAATAGACTCTGATCTCATATGATTTACTGTGGCAATGTGGGCGTGCATTTCAATAAACAGCTTTTTTACTg

Function

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0036149 phosphatidylinositol acyl-chain remodeling biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0044020 histone methyltransferase activity (H4-R3 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-482 Predicted to act upstream of or within spermatogenesis. Is expressed in several structures, including brain; eye; gonad; somite; and spinal cord neural tube. Human ortholog(s) of this gene implicated in spermatogenic failure 26. Orthologous to human TSGA10 (testis specific 10).

Ensembl:

ensembl_id ENSDART00000101017

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003150 lncRNA upstream 398368 49244352 ~ 49252654 (+) True XLOC_000616
TCONS_00003149 lncRNA upstream 499015 49134464 ~ 49152007 (+) True XLOC_000615
TCONS_00001049 lncRNA upstream 723973 48923328 ~ 48927049 (+) False XLOC_000614
TCONS_00003148 lncRNA upstream 723973 48924401 ~ 48927049 (+) True XLOC_000614
TCONS_00002873 lncRNA upstream 814100 48835224 ~ 48836922 (+) True XLOC_000613
TCONS_00003151 lncRNA downstream 25379 49699382 ~ 49713723 (+) False XLOC_000626
TCONS_00003152 lncRNA downstream 25379 49699382 ~ 49774940 (+) False XLOC_000626
TCONS_00003153 lncRNA downstream 63397 49737400 ~ 49743227 (+) True XLOC_000626
TCONS_00003154 lncRNA downstream 246787 49920790 ~ 49922873 (+) True XLOC_000628
TCONS_00003155 lncRNA downstream 715316 50389319 ~ 50392789 (+) False XLOC_000632
TCONS_00001056 mRNA upstream 45168 49568335 ~ 49605854 (+) True XLOC_000622
TCONS_00001055 mRNA upstream 138478 49510209 ~ 49512544 (+) True XLOC_000621
TCONS_00001053 mRNA upstream 169849 49435017 ~ 49481173 (+) False XLOC_000620
TCONS_00001052 mRNA upstream 218875 49415281 ~ 49432147 (+) True XLOC_000619
TCONS_00001051 mRNA upstream 295709 49352900 ~ 49355313 (+) True XLOC_000618
TCONS_00001066 mRNA downstream 8309 49682312 ~ 49688385 (+) False XLOC_000625
TCONS_00001067 mRNA downstream 12405 49686408 ~ 49698110 (+) True XLOC_000625
TCONS_00001069 mRNA downstream 140458 49814461 ~ 49903487 (+) False XLOC_000627
TCONS_00001070 mRNA downstream 140939 49814942 ~ 49905357 (+) False XLOC_000627
TCONS_00001071 mRNA downstream 203997 49878000 ~ 49886512 (+) True XLOC_000627
TCONS_00001057 other upstream 60199 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001054 other upstream 178697 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001047 other upstream 1736813 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001046 other upstream 1753637 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001027 other upstream 2549226 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001068 other downstream 25900 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001079 other downstream 457155 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001084 other downstream 1180361 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001097 other downstream 1392779 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001111 other downstream 1791465 51465468 ~ 51465582 (+) True XLOC_000651

Expression Profile

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