Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003140 |
| length | 4247 |
| lncRNA type | antisense_over |
| GC content | 0.36 |
| exon number | 2 |
| gene id | XLOC_000595 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 46959902 ~ 46964228 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042692 | muscle cell differentiation | biological_process |
| GO:0048468 | cell development | biological_process |
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0071840 | cellular component organization or biogenesis | biological_process |
| GO:0006936 | muscle contraction | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0010927 | cellular component assembly involved in morphogenesis | biological_process |
| GO:0055001 | muscle cell development | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0043624 | cellular protein complex disassembly | biological_process |
| GO:0031032 | actomyosin structure organization | biological_process |
| GO:0007010 | cytoskeleton organization | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0009653 | anatomical structure morphogenesis | biological_process |
| GO:1901879 | regulation of protein depolymerization | biological_process |
| GO:0097435 | supramolecular fiber organization | biological_process |
| GO:0051261 | protein depolymerization | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0032989 | cellular component morphogenesis | biological_process |
| GO:0071691 | cardiac muscle thin filament assembly | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0003012 | muscle system process | biological_process |
| GO:0030029 | actin filament-based process | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0032501 | multicellular organismal process | biological_process |
| GO:0030042 | actin filament depolymerization | biological_process |
| GO:0016043 | cellular component organization | biological_process |
| GO:0099080 | supramolecular complex | cellular_component |
| GO:0099081 | supramolecular polymer | cellular_component |
| GO:0043292 | contractile fiber | cellular_component |
| GO:0044449 | obsolete contractile fiber part | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0099512 | supramolecular fiber | cellular_component |
| GO:0031672 | A band | cellular_component |
| GO:0030016 | myofibril | cellular_component |
| GO:0030017 | sarcomere | cellular_component |
| GO:0030018 | Z disc | cellular_component |
| GO:0031430 | M band | cellular_component |
| GO:0150034 | distal axon | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0044877 | protein-containing complex binding | molecular_function |
| GO:0008092 | cytoskeletal protein binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00001023 | lncRNA | upstream | 114226 | 46827891 ~ 46845676 (+) | True | XLOC_000593 |
| TCONS_00003139 | lncRNA | upstream | 223786 | 46735728 ~ 46736116 (+) | True | XLOC_000592 |
| TCONS_00003135 | lncRNA | upstream | 232945 | 46719571 ~ 46726957 (+) | False | XLOC_000591 |
| TCONS_00003142 | lncRNA | downstream | 125273 | 47089501 ~ 47101796 (+) | False | XLOC_000596 |
| TCONS_00003143 | lncRNA | downstream | 188962 | 47153190 ~ 47155997 (+) | True | XLOC_000597 |
| TCONS_00003144 | lncRNA | downstream | 489365 | 47453593 ~ 47459506 (+) | False | XLOC_000602 |
| TCONS_00003145 | lncRNA | downstream | 489437 | 47453665 ~ 47459506 (+) | False | XLOC_000602 |
| TCONS_00003146 | lncRNA | downstream | 489547 | 47453775 ~ 47459506 (+) | False | XLOC_000602 |
| TCONS_00001024 | mRNA | upstream | 2551 | 46948010 ~ 46957351 (+) | True | XLOC_000594 |
| TCONS_00001022 | mRNA | upstream | 305374 | 46652615 ~ 46654528 (+) | True | XLOC_000590 |
| TCONS_00001021 | mRNA | upstream | 342619 | 46598764 ~ 46617283 (+) | True | XLOC_000589 |
| TCONS_00001020 | mRNA | upstream | 347853 | 46598502 ~ 46612049 (+) | False | XLOC_000589 |
| TCONS_00001017 | mRNA | upstream | 366003 | 46509176 ~ 46593899 (+) | False | XLOC_000588 |
| TCONS_00001026 | mRNA | downstream | 127240 | 47091468 ~ 47105214 (+) | False | XLOC_000596 |
| TCONS_00001028 | mRNA | downstream | 201614 | 47165842 ~ 47173177 (+) | False | XLOC_000598 |
| TCONS_00001029 | mRNA | downstream | 201760 | 47165988 ~ 47173403 (+) | True | XLOC_000598 |
| TCONS_00001030 | mRNA | downstream | 214301 | 47178529 ~ 47187878 (+) | False | XLOC_000599 |
| TCONS_00001031 | mRNA | downstream | 214301 | 47178529 ~ 47202163 (+) | False | XLOC_000599 |
| TCONS_00001019 | other | upstream | 373300 | 46582467 ~ 46586602 (+) | True | XLOC_000588 |
| TCONS_00001013 | other | upstream | 558266 | 46400612 ~ 46401636 (+) | True | XLOC_000586 |
| TCONS_00000997 | other | upstream | 1191372 | 45768416 ~ 45768530 (+) | True | XLOC_000573 |
| TCONS_00000982 | other | upstream | 1789250 | 45170046 ~ 45170652 (+) | True | XLOC_000563 |
| TCONS_00000975 | other | upstream | 1950286 | 45007403 ~ 45009616 (+) | True | XLOC_000559 |
| TCONS_00001025 | other | downstream | 125273 | 47089501 ~ 47095865 (+) | False | XLOC_000596 |
| TCONS_00001027 | other | downstream | 131597 | 47095825 ~ 47101796 (+) | True | XLOC_000596 |
| TCONS_00001046 | other | downstream | 933041 | 47897269 ~ 47897385 (+) | True | XLOC_000608 |
| TCONS_00001047 | other | downstream | 949867 | 47914095 ~ 47914209 (+) | True | XLOC_000609 |
| TCONS_00001054 | other | downstream | 2500513 | 49464741 ~ 49472325 (+) | True | XLOC_000620 |
