RNA id: TCONS_00001026


Basic Information

Item Value
RNA id TCONS_00001026
length 1976
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_000596
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 47089501 ~ 47105214 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCATTTCGAGTCACGTGcaggaaatgaacaaaacactaCCGCAGTCAGTCAGCTACAGGCAAATATATATCATACATCATAACAGATGCAGATATTTTATCACCGATCTTGGCGTTTTTAACAGAGACACGCCAGTTATAGAAGGGAAAACAATAGCTTAGATGCTTTACAAGGATGACGTATTCCGGTTGATTTGGACCTTGAGTTTTTGAGTTAGCAGAAAAGATTTAAAGCATGCATTAAATGACATTCAAGTATTATTTCAATATAAAGTATTACGGAATTCAGGTTGTTGCTATTACTTGTATTACCTGTTAAGTGGGCATTAGTCGATTTAAATACAGCTAGAATTGCCATGAAGGGACTTTACTGCAAACCAGGAGACCAAGAAGATGTCAAGTTTGTCTTACAGGAGACGAGTTTACCCACTAACATTGGCAACCATCAGGTCAAAGTTCAAGTAAAGAGCTGTGCACTAAGTCCAGTTGATTTTAAgATGTATGAAGACCTCAAGCTTGAGAAGGAGCATGTTCCAGTTGGAAGGGAGATCGCTGGGGTTGTTCTTCAAGTGGGACCCAAAGTGATGTTTTTCCAACCAGACGATGAGGTTGTGGGGATTCTCCCATTGGATGCTGAGCAGTCTGGCCTTTGTTCAGTCGTGCTTATTGACGAATTTAATCTAGTTCCGAAGCCGGAGAAAGTGAGCTGGTTTGAAGCAGCAGCGGTAATTAAAGATGGTCTCAGGGCCTACACCGCTCTTCATACGCTGGCACGAATGGCAGCAGGACAGACTGTACTGGTGCTGGATGGGGCGTCTCCCTTTGGAGTTCTGGCCATTCAGCTTGCCCACTATCACGGTGTAAAAGTCTTGGCTACAGCTTTGTCCCCGGAGGACCAGAAGTTTTTGCAAGAGCTGCGGCCGAATGTGGCTCGAGTGATCAGATTGTGGGACGCAAAGGAGGATTTGGTGGACTCGTGCCTTGAAGAGACTGGAGGTCTTGGAGTGGACATCATCGTTGATTCAGGAGTGAGACTCTATGATGAAGAGCCAGAAGCACAGACGAAACAGCCACATAAACACGACCTCCTCACCCTGCTTTCAGTTGGAGGTCATTGGGTCACCACAGAACAGCACTTACAGCTGGACCCTCCCGACAGCCACATTCTCTTCCTGAAGGCAGCATCGCTCTCATTTCTTAATGATGAAGTGTGGACAGTGTCCCGTGCCAAGCAGGGCCGATATCTTCATATCTTGAAGGATGTGATGAATAAACTCTGCATGGGGACTTTTAGGCCACAGATGGAGCACCCCGTGCCTTTATATGAAGCTACTGTCTCGATGGAGATGGTACAGAGGAAGCAAGTGAGGAAGAGAATAGTCGTCAAGCTTTGAAAAGCACTTCTAAATATTCTGTTCAGTTTATATTGTTTTGATTCTCATCATGTTTTATTTGACATAAAGCCGACAACTGCACATTTCTGTTCCTATTTCAAATCATTTCACGAAAACAATGAAATCACAAATGTACATTATTACACGCTAAATGTAAAGTGTTCTGCCATAATAAACCTCTGAAGATATTTACATGAAACATTTTTGCTAAGCAACTCGAATTTTGACCCACTGTAGATGTGATTTTGTTTTCCTTCTCAAGCATTCCCTATGGATTATTAATGGCACCATCTGATCCCGTGTCTCCTGGCTATTAATGTGGGCAGCGCTGTGTGGAAAAGAGCCAATAATAGTGACTTGGAATCTTGCATCATTGTTCAAAGTATGCATCTGATTATTAGTAGTCTCTCATTAAGACTCTCAAGATAATCCTTGCTTGCTTTCAAAAGGAGAGATGTGTTTGTTAGGATCCCATTGTCCTAAATGTGCTATTGACATCTTGGCCAAATTCCCAAATTGTCGCATAAATATCAAGGAGAAAGATTAATTAAACTCTGAAATCCCACTTGGACAAAATCAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-378 Predicted to enable oxidoreductase activity. Orthologous to human CRYZL1 (crystallin zeta like 1).

Ensembl:

ensembl_id ENSDART00000036783

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003140 lncRNA upstream 127240 46959902 ~ 46964228 (+) False XLOC_000595
TCONS_00003141 lncRNA upstream 127240 46960233 ~ 46964228 (+) True XLOC_000595
TCONS_00001023 lncRNA upstream 245792 46827891 ~ 46845676 (+) True XLOC_000593
TCONS_00003139 lncRNA upstream 355352 46735728 ~ 46736116 (+) True XLOC_000592
TCONS_00003136 lncRNA upstream 364511 46719607 ~ 46726957 (+) False XLOC_000591
TCONS_00003143 lncRNA downstream 47976 47153190 ~ 47155997 (+) True XLOC_000597
TCONS_00003144 lncRNA downstream 348379 47453593 ~ 47459506 (+) False XLOC_000602
TCONS_00003145 lncRNA downstream 348451 47453665 ~ 47459506 (+) False XLOC_000602
TCONS_00003146 lncRNA downstream 348561 47453775 ~ 47459506 (+) False XLOC_000602
TCONS_00003147 lncRNA downstream 348595 47453809 ~ 47459506 (+) True XLOC_000602
TCONS_00001024 mRNA upstream 134117 46948010 ~ 46957351 (+) True XLOC_000594
TCONS_00001022 mRNA upstream 436940 46652615 ~ 46654528 (+) True XLOC_000590
TCONS_00001021 mRNA upstream 474185 46598764 ~ 46617283 (+) True XLOC_000589
TCONS_00001020 mRNA upstream 479419 46598502 ~ 46612049 (+) False XLOC_000589
TCONS_00001017 mRNA upstream 497569 46509176 ~ 46593899 (+) False XLOC_000588
TCONS_00001028 mRNA downstream 60628 47165842 ~ 47173177 (+) False XLOC_000598
TCONS_00001029 mRNA downstream 60774 47165988 ~ 47173403 (+) True XLOC_000598
TCONS_00001030 mRNA downstream 73315 47178529 ~ 47187878 (+) False XLOC_000599
TCONS_00001031 mRNA downstream 73315 47178529 ~ 47202163 (+) False XLOC_000599
TCONS_00001032 mRNA downstream 73338 47178552 ~ 47184966 (+) True XLOC_000599
TCONS_00001019 other upstream 504866 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001013 other upstream 689832 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00000997 other upstream 1322938 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00000982 other upstream 1920816 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 2081852 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00001046 other downstream 792055 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001047 other downstream 808881 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001054 other downstream 2359527 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001057 other downstream 2485487 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001068 other downstream 2594689 49699903 ~ 49715822 (+) False XLOC_000626

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000119_01487373_01493240.mRNA True 1343 mRNA 0.42 11 CI01000119 1487198 ~ 1493484 (-)