Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001039 |
| length | 1245 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 4 |
| gene id | XLOC_000604 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 47486104 ~ 47492961 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | description |
|---|---|
| ZDB-GENE-090312-76 | Orthologous to human LRRC58 (leucine rich repeat containing 58). |
| ensembl_id | ENSDART00000114746 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003144 | lncRNA | upstream | 26598 | 47453593 ~ 47459506 (+) | False | XLOC_000602 |
| TCONS_00003145 | lncRNA | upstream | 26598 | 47453665 ~ 47459506 (+) | False | XLOC_000602 |
| TCONS_00003146 | lncRNA | upstream | 26598 | 47453775 ~ 47459506 (+) | False | XLOC_000602 |
| TCONS_00003147 | lncRNA | upstream | 26598 | 47453809 ~ 47459506 (+) | True | XLOC_000602 |
| TCONS_00003143 | lncRNA | upstream | 330107 | 47153190 ~ 47155997 (+) | True | XLOC_000597 |
| TCONS_00002871 | lncRNA | downstream | 665436 | 48158397 ~ 48158958 (+) | True | XLOC_000610 |
| TCONS_00002872 | lncRNA | downstream | 738895 | 48231856 ~ 48232312 (+) | True | XLOC_000611 |
| TCONS_00002873 | lncRNA | downstream | 1342263 | 48835224 ~ 48836922 (+) | True | XLOC_000613 |
| TCONS_00001049 | lncRNA | downstream | 1430367 | 48923328 ~ 48927049 (+) | False | XLOC_000614 |
| TCONS_00003148 | lncRNA | downstream | 1431440 | 48924401 ~ 48927049 (+) | True | XLOC_000614 |
| TCONS_00001038 | mRNA | upstream | 744 | 47459723 ~ 47485360 (+) | True | XLOC_000603 |
| TCONS_00001037 | mRNA | upstream | 37254 | 47446032 ~ 47448850 (+) | True | XLOC_000601 |
| TCONS_00001036 | mRNA | upstream | 38379 | 47446032 ~ 47447725 (+) | False | XLOC_000601 |
| TCONS_00001034 | mRNA | upstream | 74918 | 47335038 ~ 47411186 (+) | False | XLOC_000600 |
| TCONS_00001033 | mRNA | upstream | 77041 | 47331644 ~ 47409063 (+) | False | XLOC_000600 |
| TCONS_00001041 | mRNA | downstream | 6927 | 47499888 ~ 47513484 (+) | True | XLOC_000605 |
| TCONS_00001042 | mRNA | downstream | 92739 | 47585700 ~ 47686888 (+) | False | XLOC_000606 |
| TCONS_00001043 | mRNA | downstream | 92740 | 47585701 ~ 47683257 (+) | True | XLOC_000606 |
| TCONS_00001044 | mRNA | downstream | 338658 | 47831619 ~ 47976606 (+) | False | XLOC_000607 |
| TCONS_00001045 | mRNA | downstream | 338658 | 47831619 ~ 48012257 (+) | True | XLOC_000607 |
| TCONS_00001027 | other | upstream | 384308 | 47095825 ~ 47101796 (+) | True | XLOC_000596 |
| TCONS_00001025 | other | upstream | 390239 | 47089501 ~ 47095865 (+) | False | XLOC_000596 |
| TCONS_00001019 | other | upstream | 899502 | 46582467 ~ 46586602 (+) | True | XLOC_000588 |
| TCONS_00001013 | other | upstream | 1084468 | 46400612 ~ 46401636 (+) | True | XLOC_000586 |
| TCONS_00000997 | other | upstream | 1717574 | 45768416 ~ 45768530 (+) | True | XLOC_000573 |
| TCONS_00001046 | other | downstream | 404308 | 47897269 ~ 47897385 (+) | True | XLOC_000608 |
| TCONS_00001047 | other | downstream | 421134 | 47914095 ~ 47914209 (+) | True | XLOC_000609 |
| TCONS_00001054 | other | downstream | 1971780 | 49464741 ~ 49472325 (+) | True | XLOC_000620 |
| TCONS_00001057 | other | downstream | 2097740 | 49590701 ~ 49590823 (+) | True | XLOC_000623 |
| TCONS_00001068 | other | downstream | 2206942 | 49699903 ~ 49715822 (+) | False | XLOC_000626 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU382957 | True | 717 | TUCP | 0.47 | 3 | CI01000119 | 1292245 ~ 1294638 (+) |
