RNA id: TCONS_00000996


Basic Information

Item Value
RNA id TCONS_00000996
length 3472
RNA type mRNA
GC content 0.49
exon number 22
gene id XLOC_000572
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45754868 ~ 45836167 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGACCCACAGGAGCGCGCAACCGGCGTGCTGGCAGTGCACGCGCCCGGTAATAGTAAACGACCCTCCCGCGCGAGCGAGCCATCATCACTGGCGCGAGGCTCACACGGGCGACACTCTCTTTTACAAAAGGGCGAATTTGTTTATTATTCCCCGGCTGTGAATATCAACTTCTCGGGCTTCGTTTGTTGAAGAAACGACAGTTGAGCTGAATATACCGTTGGTGTTTTCGGGTGATGAATTGAGAAGAAAAGCTGAACTCTTTTTGACCAGTTACCCTGCCCAGTGCGGTACATGTATGCAGCTGAGAAAGAGCAACTATTCCAGGACGATGTTATGGATAAATGCACGCGACTTAACGCCAAGCTGTGGATATGTCAGTGGATAGTTTGAATGGACGTTGTCAGACATACAGCTAATGCTTTTATATCGTATTCGCATACAATTGTTTTCATCCTAAATGCGATTTTAATTGCTTATGACAGCATGCATCAGGTATTACAGTGATGCAACAGCATTTATTACATGTTAACAAGTTGTTCGAGCGCTGTTGGATCTTAAACTGTTGCATTGAGGGCTGACAGAAGAATAGGATCCCTTTGTCGGCGATCGTTGGGAATCTAGGAAGAGGAGGAACGACAATTTGGGTGTCCTGAAACAAACGACAATCCAGATATACAACCATGGCAAATGACTCAATCCAAAGTGATCCCGGTGGGTTGTCTGGATTAGAGCGGCTTGGCTTGGACCACAGCTCTGATTACTCTGACTCGAGCGTACAACAGCGACTGGATAAAGAGCGCGAGCGAATCCGTCGGGAAATCCGCAAGGAGCTGAAGATTAAAGAGGGGGCAGAGAATCTCCGCAGAGCCACTACAGATAAACGAAATGCTCAGCAGGTGGACAGCCAGTTGCGCTGCTCAAATCGGCGTCTGGACTCACTCCATGCTGAATTACAAGAACTGGACGCTCATATTGTGGTCAAAGGGACCGATGATACACACGATGACGCTCCTCAGTCTCCGGGAGCGGAGAGCAGGTCATCGGCACACAAGGAGAGAATTGCTGCTTTGGAAAGGCAGTTAAACATCGAGCTCAAAGTCAAACAGGGGGCAGAAAACATGATCCCCATTTATACCAACGGTTCCACCAAGgaCAAGAAGATGTTGCAAACAGCTCAGCAGATGCTACAGGACAGCAAGACAAAGATTGACATCATCCGCATGCAGATCCGGAAAGCAGTGCAGGCCTACGAACACAACGATGATACACAGGGAAAGCCTGATCCATGTGGTATGGAGCTACGCATTGAAGAGCTCAGACACCATTACCGAGTAGAGCACGCCGTCGCTGAGGGAGCCAAAAACGTCCttagacttcttggagccagtaAAGTACAAGACAAGAAGGCCATGTCAGAGGCTCAGTGTCGTCTGAGTGAATCGTCGCAAAGGTTGGACCTGCTGCGAGATTCTTTAGATCGACGGTTAGCAGAGCTTCCTGAGGATCATCCCAAAGCTTCTGTTATCAAAGAGGAGCTGGTTTTAGCATCCTCACCAGCCTTCAGCTCTCAACACAGCGCCCCCTACCTGCACAACCAGTACAGCACTCTCTCCAAACCCTCACCCCTCACTGGTCGGCTCCAGGTGACATTATTGGGCTGTATGGGTCTTCTGGAGGTGGTTCCCGGACGCTCTCGTGGTAGCCAGGTGGTTTTACCGTGTTACAGTCCAGGAGAGGGACGATCATTCATGCGCAGTGGAAAAGGCCTGTATAGTCGCAGTGGCAGCGTTAGTGGAAAAACACCCCTCAAAACCGACGAACTCTCCTcggATGTGAGCGCAGTATTGAAGCTGGACAACACTGTGGTGTGTCAGACGGCATGGAAGATGGTTGGAGAACAGGGCTGGGATCAGACCTTCATCATCGAGCTGGAGAGAtccAGAGAGATGGAGATTGCCGTGTACTGGAGAGACTACCGCTCTCTGTGTGCGCTGAAATTTCTCAAGCTGGAGGATTTCTTGGACAACCAGAAACACAAAGTACAACTAGAGCTAGAACCACAGGGACTGCTGCTGGCAGAGGTTACTTTCTTTAACCCTGTGATTGAGAGGGTTCCACGGCTAAAACGGCAGAAGAATGTTTTCTCCAAGCAGCAGGGTAAAGCATTTTTGCGAGCTCGACAGATGAACGTTGATATTGGCACATTCGTGAGGTTACTGAGGAACGCCATACCAACCGTCAACAACACAGGAACCTACAGCCCTAACGCGCACACTCTACAGACTGGGGAGATATCAGTGGAGAAGTTGAGTTTAGATTTTGATTCACCAATGAAGGTGGACATCCGGCGGGAGGTGACAGATATAAGCACTCCGgaGAGGCAGCCGTCCACCGAGCCTCTCTCTGCTCCAGACGTCACCACGCCTATCAGAACACACTCATTGAGCAGtaaacAGAAGAAGACTTCTCTGAGCCTGCAGGATTTCCGACTAATTGCAGTTCTTGGCAGAGGCCATTTTGGAAAGGTGCTGCTGGCGGAATATAAGAAGTCAGGGAGTATGTATGCCATTAAAGCTCTAAAGAAAGGAGACATTGTAGCCAGAGATGAAGTAGAAAGTTTGATGTGTGAGAAGCGTATTTTCGAGGCAGTGAACGGTGCACAACACCCCTTCCTTGTCAACCTGTTTGCGTGTTTCCAGACTCCAGAACATGTGTGTTTTGTGATGGAGTACACAGCAGGCGGTGACCTCATGATGCACATACATGCAGACGTCTTCACCGAGCCACGGGCTGTGTTTTATTCTGCTTGTGTAGTTTTAGGGCTTCAGTTTTTACATGACAACAAGATTGTGTACCGAGATCTTAAATTAGACAACTTGCTGCTTGACACAGAGGGTTATGTGAAGATTGCCGACTTTGGATTGTGTAAAGAAGGTATGGGTTTTGGGGACCGGACCAGTACGTTCTGCGGGACTCCAGAGTTTCTGGCTCCAGAGGTTTTGACAGACACATCGTACACCCGTGCTGTGGACTGGTGGGGTCTCGGAGTGCTTATATATGAAATGTTGGTGGGAGAGTCCCCATTCCCAGGTGATGACGAAGAGGAAGTTTTTGACAGCATAGTGAATGATGAAGTTCGATACCCCAGGTTCCTGTCCGCAGAGGCCATTGGCATCATGAGGAGGttaCTAAGGAGAAATCCAGAAAGACGACTGGGCTCCAGTGAGAAAGATGCAGAAGATGTAAAGAAACAGCCTTTCTTCAGGAATATGGACTGGGAGGCTCTTCTCCTCCGCAAACTCCCTCCTCCTTTTATTCCATCCATCGGAGGAAAAGAAGACGTCAGCAACTTTGATGAGGAGTTCACGACAGAAGCGCCGACTCTCACTCCTCCCCGCGAGCCTCGAGTGCTTTCGCGCAAAGATCAGGACAGTTTCCGGGACTTCGACTATGTGTCTGACCTCTGCTGA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-17 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be located in nucleus. Orthologous to human PKN1 (protein kinase N1).

Ensembl:

ensembl_id ENSDART00000084512

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003123 lncRNA upstream 106622 45644766 ~ 45648246 (+) True XLOC_000568
TCONS_00003122 lncRNA upstream 356047 45383604 ~ 45398821 (+) True XLOC_000567
TCONS_00000974 lncRNA upstream 745895 45004906 ~ 45008973 (+) False XLOC_000559
TCONS_00000969 lncRNA upstream 781942 44970569 ~ 44972926 (+) True XLOC_000557
TCONS_00000968 lncRNA upstream 783628 44968462 ~ 44971240 (+) False XLOC_000557
TCONS_00003124 lncRNA downstream 34056 45867040 ~ 45869497 (+) False XLOC_000575
TCONS_00003125 lncRNA downstream 34073 45867057 ~ 45869497 (+) True XLOC_000575
TCONS_00003126 lncRNA downstream 199736 46032720 ~ 46040123 (+) False XLOC_000579
TCONS_00003127 lncRNA downstream 199736 46032720 ~ 46061493 (+) False XLOC_000579
TCONS_00003128 lncRNA downstream 199767 46032751 ~ 46040123 (+) False XLOC_000579
TCONS_00000994 mRNA upstream 10014 45707219 ~ 45744854 (+) False XLOC_000571
TCONS_00000995 mRNA upstream 10014 45740183 ~ 45744854 (+) True XLOC_000571
TCONS_00000993 mRNA upstream 54294 45671687 ~ 45700574 (+) True XLOC_000570
TCONS_00000990 mRNA upstream 85424 45663727 ~ 45669444 (+) False XLOC_000569
TCONS_00000992 mRNA upstream 85833 45663807 ~ 45669035 (+) True XLOC_000569
TCONS_00000999 mRNA downstream 6943 45839927 ~ 45856178 (+) False XLOC_000574
TCONS_00001002 mRNA downstream 6964 45839948 ~ 45856178 (+) False XLOC_000574
TCONS_00001001 mRNA downstream 6964 45839948 ~ 45856178 (+) False XLOC_000574
TCONS_00001000 mRNA downstream 6964 45839948 ~ 45856178 (+) True XLOC_000574
TCONS_00001003 mRNA downstream 89715 45922699 ~ 45924004 (+) True XLOC_000576
TCONS_00000982 other upstream 584216 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 745252 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00000971 other upstream 757098 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000970 other upstream 765322 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00000949 other upstream 984813 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00001013 other downstream 567628 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00001019 other downstream 749483 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001025 other downstream 1256517 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001027 other downstream 1262841 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001046 other downstream 2064285 47897269 ~ 47897385 (+) True XLOC_000608

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000119_02271227_02288898.mRNA True 3447 mRNA 0.49 21 CI01000119 2270558 ~ 2288898 (-)