XLOC_000576 (lipt1)


Basic Information

Item Value
gene id XLOC_000576
gene name lipt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45922699 ~ 45924004 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001003
TTTGAGAAAATCCTGTTGACCCGGCAGTCAAAGTACGCCGTAGCTGCAGACAGTCAAATAAACTGCTCACATCGAAATGTAAAGCCCGaacattttattattgtcattatttacacACAATTATAAATTAATCACATGTGTTTTAGTGCGTTACAGACTTTTAATAGCGATGATTTTGAGACTGTCAAGCAGGGCATGTGTCCTCTCAGGATCAGTTCGCCTCAAAAGCACTTTGGCGTCTTTCTTCGACGATCTGGGAAAATCAGGAATCATCCTAAAATCTGCATCATCTGGCATATTCGAGAACCTAGCCTTAGAAGACTGGATACACGACCACGTTGATCTGCAGAACAGAAGCTTGCTGTTGTTGTGGAGAAACTCTCCTGTTGTGGTCATCGGAAGACACCAAAACCCCTGGCAGGAGTGCAACCTTCCCGCGACGCGACGGTTGGGGATCCCGCTGGCGAGGCGGCGCAGTGGAGGCGGGACGGTTTTCCATGACTTTGGAAACATTAACATGACCTTCTTCACCTCCAAAAAGAAATACGACCGTCACAGGAATCTCAAAGTGGTTACAAGTGCATTAAAAGCTCTGAGACCTAATCTAGACGTCGCCGCGACGGATAgatttgacattttattaaacGGCCATTACAAGATTTCAGGCACTGCTGCAAAGTTAGGCAGGAGCTCTGCTTATCATCACTGTACATTACTGTGCTCTGTTGACCGTTCAGTGTTGTCTTCAGTGCTAAAGAGTAACACTGCTGAGGTTATCAAGAGCAATGCTACCCCAAGTGTCCCTTCCCCTGTCAAGAACCTTCTAGAAGTGGATCCCACTCTTGATTCCAGCACCATCATGGAGGCTATTGCTTCCCAGTATAATAGTGAATTTGGCTTTGATAGTCCTGTCATCACAGTTGACCCCACTCATGAAGCTCTCATGCCTGGCATTCATAAGATGGCACATGATCTTCAGACATGGGAGTGGATTTATGGCAAAACCCCAAAGTTCAGTGTTTGCACAGCTTTAGTTGTCGATGATGTGAATATTAAGCTTGATATGGATGTCAGGAATGGTACTGTGGAGCGATGTGCTTTGGAAATCCCTGCAGACTGGCTTTCTCCAGAGATTGTGAATGAGCTTATATCAACTCTGAAAGGCAGCAGATACTGTCCAAATGAAACTGCGGTGCTGGTGGCTGCATTCATGAGGACTCGGTCAATGACAGACAATGTTGCTGAGAAGATTCATAGATTGTGTGAAGAAATGCTTTCTGTCATGTGAATAAAAGGGAAGATATAA

Function

symbol description
lipt1 Predicted to enable lipoyltransferase activity. Predicted to be involved in protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT1 (lipoyltransferase 1).

GO:

id name namespace
GO:0009249 protein lipoylation biological_process
GO:0006464 cellular protein modification process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0017118 lipoyltransferase activity molecular_function
GO:0016979 lipoate-protein ligase activity molecular_function

KEGG:

id description
ko00785 Lipoic acid metabolism

ZFIN:

id description
ZDB-GENE-060929-112 Predicted to enable lipoyltransferase activity. Predicted to be involved in protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT1 (lipoyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000025233

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001003 True 1306 mRNA 0.45 1 45922699 45924004

Neighbor

gene id symbol gene type direction distance location
XLOC_000575 NA coding upstream 53202 45867040 ~ 45869497 (+)
XLOC_000574 map2k7 coding upstream 66521 45839927 ~ 45856178 (+)
XLOC_000572 pkn1a coding upstream 86532 45754868 ~ 45836167 (+)
XLOC_000573 BX511120.1 coding upstream 154169 45768416 ~ 45768530 (+)
XLOC_000571 si:ch211-214c7.4 coding upstream 177845 45707219 ~ 45744854 (+)
XLOC_000577 eif5b coding downstream 1146 45925150 ~ 46020725 (+)
XLOC_000578 si:ch211-138g9.2 coding downstream 102453 46026457 ~ 46030577 (+)
XLOC_000579 NA coding downstream 108716 46032720 ~ 46153200 (+)
XLOC_000580 sox1b coding downstream 270329 46194333 ~ 46196107 (+)
XLOC_000581 NA coding downstream 293499 46217503 ~ 46219161 (+)
XLOC_000568 NA non-coding upstream 274453 45644766 ~ 45648246 (+)
XLOC_000567 NA non-coding upstream 523878 45383604 ~ 45398821 (+)
XLOC_000563 AL953855.1 non-coding upstream 752047 45170046 ~ 45170652 (+)
XLOC_000582 NA non-coding downstream 323614 46247618 ~ 46248591 (+)
XLOC_000583 NA non-coding downstream 325975 46249979 ~ 46251824 (+)
XLOC_000584 NA non-coding downstream 339447 46263451 ~ 46272326 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G336919 NA non-coding CI01000119 null 2202548 ~ 2203827 (+)