G79488


Basic Information

Item Value
gene id G79488
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 9158945 ~ 9159274 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU94360
TacttctggtccactaatttgattggatgagCAGTGTTCCAAGATTAAGcctatatttagtataactggGAAGTATCACACATTGCATCATTCTGCTCGTCTGTGTttgccacataaaattccaattctagcaacacTGAAACTGTTATTACATTAGAGGTAGCTACATCAGCAGACATAGCAAACAATACAATTTtcatgaaatataatttttgatttaaaatatgaatgccCTTCTGATGAAGATGATAAGGAAGAAAGGAAGCCATtttcaccagaagcacctttaatgaaATGTACTAATCAAtgtgaactagctagctaatgggC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU94360 True 330 lncRNA 0.35 1 9158945 9159274

Neighbor

gene id symbol gene type direction distance location
nhlh2 nhlh2,LOC108266261,LOC105019883,LOC107576851,LOC103035065,LOC107739819,LOC107719823 coding downstream 72076 9083482 ~ 9086869 (-)
vangl1 LOC108267010,LOC108432602,LOC103036576,LOC107719814,LOC107731768,LOC107690494,LOC107690599 coding downstream 81519 9053522 ~ 9077426 (-)
atp5po atp5o,LOC107569847,LOC107748167,LOC107595838 coding downstream 171492 8982219 ~ 8987453 (-)
dop1b dopey2 coding downstream 192913 8934676 ~ 8966032 (-)
LOC113525956 LOC108266383 coding downstream 238760 8898770 ~ 8920185 (-)
ankrd50l LOC108266510,LOC108412971 coding upstream 1134 9160408 ~ 9174609 (-)
rabl3 rabl3,LOC102779363 coding upstream 154910 9314184 ~ 9318165 (-)
plcl1 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107719808 coding upstream 273826 9433100 ~ 9491116 (-)
coq10b coq10b,LOC107569649,LOC107690612,LOC107731759 coding upstream 378788 9538062 ~ 9546408 (-)
pikfyve pikfyve coding upstream 438965 9598239 ~ 9627430 (-)
G79507 NA non-coding downstream 9752 9148897 ~ 9149193 (-)
G79414 NA non-coding downstream 115519 9042748 ~ 9043426 (-)
G79360 NA non-coding downstream 224530 8933945 ~ 8934415 (-)
LOC117597335 NA non-coding downstream 383542 8772623 ~ 8775403 (-)
G79227 NA non-coding downstream 485194 8668115 ~ 8673751 (-)
LOC113525875 wap65-1 non-coding upstream 22393 9181667 ~ 9195988 (-)
G79529 NA non-coding upstream 52831 9212105 ~ 9214216 (-)
G79541 olig1 non-coding upstream 96114 9255388 ~ 9256891 (-)
G79553 NA non-coding upstream 135329 9294603 ~ 9294803 (-)
G79799 hspd1,LOC107690611 non-coding upstream 372735 9532009 ~ 9535607 (-)
cnga4 cnga4 other downstream 10298 9099536 ~ 9148647 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other downstream 139497 8996783 ~ 9019448 (-)
LOC117597331 NA other downstream 281709 8857819 ~ 8877236 (-)
G79349 NA other downstream 386516 8771466 ~ 8772429 (-)
si:dkey-229b18.3 LOC108266764 other downstream 475530 8674804 ~ 8683415 (-)
LOC113525856 mob4,hspe1,LOC108266284,LOC106582314,LOC106586370,LOC105016277,LOC101078365,LOC101472107,LOC104932517,LOC103156730,LOC106530744,LOC100701317,LOC102310674,LOC103391647,LOC108238849,LOC107690609,LOC107731766 other upstream 361455 9520729 ~ 9531671 (-)
G79826 NA other upstream 409281 9568555 ~ 9569120 (-)
si:dkey-83m22.7 NA other upstream 473411 9632685 ~ 9654455 (-)
LOC113526229 nxpe3 other upstream 1436166 10595440 ~ 10614287 (-)
G80600 NA other upstream 1810143 10969417 ~ 10971157 (-)

Expression


Co-expression Network