LOC117597335


Basic Information

Item Value
gene id LOC117597335
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 8772623 ~ 8775403 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578170.1
CTGTTTTTCCTCAAACTGTTTTTCCTCAAACTGTTTTTCCTGtggAGCCCTTCTACACCCTGCTCATCCATCCCAATGACACCCAGACCTTCTGATGTTACTTCAGCTGACACTCAGGACACTTCTTTCTCTACTACTCCTAAAAGGAAAGCCCTGAAATGGAGTCTAGAAGAACCAGAGACAAAGAAACCTAGAAAAAGCTTTTGATA
>XR_004578171.1
ACTGCAGCTTTGAATGAGCAGGATACTGCTTTGTTGAGGAAAGAACAGGACCTTGTGCGCCTAGCTCCGATCCAGCtggAGCCCTTCTACACCCTGCTCATCCATCCCAATGACACCCAGACCTTCTGATGTTACTTCAGCTGACACTCAGGACACTTCTTTCTCTACTACTCCTAAAAGGAAAGCCCTGAAATGGAGTCTAGAAGAACCAGAGACAAAGAAACCTAGAAAAAGCTTTTGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578170.1 False 209 lncRNA 0.43 3 8772623 8774421
XR_004578171.1 True 243 lncRNA 0.47 3 8772623 8775403

Neighbor

gene id symbol gene type direction distance location
LOC117597417 NA coding downstream 4767 8764514 ~ 8767856 (-)
LOC113526244 NA coding downstream 10001 8734537 ~ 8762622 (-)
LOC113523849 LOC108266382 coding downstream 44175 8712745 ~ 8728448 (-)
chaf1b chaf1b,LOC107579096 coding downstream 64026 8696385 ~ 8708597 (-)
gja8a gja8 coding downstream 147973 8617862 ~ 8624650 (-)
LOC117597418 morc3,LOC108266382,LOC108266383 coding upstream 19283 8794686 ~ 8801200 (-)
LOC117597333 NA coding upstream 26104 8801507 ~ 8803228 (-)
LOC117597332 NA coding upstream 27865 8803268 ~ 8804192 (-)
LOC113526237 NA coding upstream 29172 8804575 ~ 8831096 (-)
LOC113526236 NA coding upstream 57305 8832708 ~ 8839197 (-)
G79227 NA non-coding downstream 98872 8668115 ~ 8673751 (-)
G79223 NA non-coding downstream 104880 8667217 ~ 8667743 (-)
G79220 acp6 non-coding downstream 108208 8662928 ~ 8664415 (-)
G79184 NA non-coding downstream 157581 8614805 ~ 8615042 (-)
LOC117597396 NA non-coding downstream 166426 8590813 ~ 8606197 (-)
G79360 NA non-coding upstream 158542 8933945 ~ 8934415 (-)
G79414 NA non-coding upstream 267345 9042748 ~ 9043426 (-)
G79507 NA non-coding upstream 373494 9148897 ~ 9149193 (-)
G79488 NA non-coding upstream 383542 9158945 ~ 9159274 (-)
LOC113525875 wap65-1 non-coding upstream 406264 9181667 ~ 9195988 (-)
G79349 NA other downstream 194 8771466 ~ 8772429 (-)
si:dkey-229b18.3 LOC108266764 other downstream 89208 8674804 ~ 8683415 (-)
G79221 NA other downstream 107044 8664690 ~ 8665579 (-)
G78626 LOC108266388 other downstream 1024985 7744726 ~ 7747638 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other downstream 1222992 7544506 ~ 7549631 (-)
LOC117597331 NA other upstream 82416 8857819 ~ 8877236 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other upstream 221380 8996783 ~ 9019448 (-)
cnga4 cnga4 other upstream 324133 9099536 ~ 9148647 (-)
LOC113525856 mob4,hspe1,LOC108266284,LOC106582314,LOC106586370,LOC105016277,LOC101078365,LOC101472107,LOC104932517,LOC103156730,LOC106530744,LOC100701317,LOC102310674,LOC103391647,LOC108238849,LOC107690609,LOC107731766 other upstream 745326 9520729 ~ 9531671 (-)
G79826 NA other upstream 793152 9568555 ~ 9569120 (-)

Expression


Co-expression Network