LOC113526237


Basic Information

Item Value
gene id LOC113526237
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 8804575 ~ 8831096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304776.1
TGCTCCTTCCTAAGAAGCTCCCTTTGGAACTGTAGACAGCAGTTTTAAACAAAGATGGCAGCACTAACAAATAGAGGAATACCTTTAAGCTCGTTCCTGCATACAAACTCCACTAGACACACCTGTCCCTTCAGTGCTGTAGCAGAACTAATCAACAATGCATATGACCCAGATGTCAGTGCAACACAATTCTGGATTGACAAAACAGTGAGTAAAGACCAGGACTGCCTCGTCTTCATGGATAATGGAAACGGGATGGACTACGACGAGATGCACAGAATGCTCAGtTTTGGCTTCAGTGATAAGCAGACGATAAGAGGCCATGGTTTTTATGGTAACGGTTTTAAGTCGGGCTCCATGCGCTTGGGGAAGGATGCCATTGTGTTCTCAAAGAAAGCCAACACCATGTGTGTGGGTCTCCTGTCACAGACTTACCTCGAGAAGATAAAAGCACAGGATGTCATAGTGCCTATTGTCATGTTTACCAAGACAAGACAGACCATCAGTGCTGCACCGGAGCATGCAGAGTGTCTTCGTGATATCCTGACATATTCTCTGTTTCAGACAGAGGAAGAACTGCTGACTGAGTTCAATGTCATTAAAAGGTTATGCACCAACTCAAGGGGAACCCGCATCATCATCTGGAACCTACGCAGAATGTCTTCAGGAGAATTAGAATTTGACTTCATCAAGGATCGCTACGACATCCGGATCCGTGATGATGTATACAAGAGCACCAGGAGGGCAAACAAGTGGCAGGCAGGGGGTGGCATGTTAGTGCCTGAGAGTGAATATTCACTGCAGGCATACTGTAGTAAACTGTACCTGAAACAAAGAATGCAGATTATCCTTCGAGGGCTGAAGGTGgaatctcagtttttcacaaaaaCTCTAGCAAAGGCCAACAGCACAGGAGTGGGAGTTATCGGGGCGATAGAGTGTAACTACCTCACACCAACTCACAACAAGCAGGACTTTGATAATTCTGACAAGTACAGGAAAACCATGCTGAGTGTAGGTGCTAAGCTTGAGGATTATTGGAAGGAAGATCAATATAGACATAAGGCAAACTTCACTGAACCTTTTGAGGATACCGTGAAGACACCAGATCAAAACTGGGTTCAGTGTGATGATTGTATGAAGTGGCGAAAACTTCCAGATGGCATTGATCCTAAACAGCTCCCTAAAATGTGGTTCTGCCACATGAACTCAGACCCTCAATTCAGGAGTTGTTCAGATGAAGAAGAGGCTAAGGATTCTGACGGTGATCAACCCAAATACCAGAAAACCTACAAACTGCAAGAGCGACACCAGAAGTTGCTGCAGGAAAACAGACAGCAGcagAGCCCTTCTATGCTTCAGATGGAAGAGGAGCAGAGGACTGCAGCTTTGAATGAGCAGGATACTGCTTTGTTGAGGAAAGAACAGGACCTTGTGCGCCAGCTCCGATCCAGCtggAGCCCTTCTACACCCTGCTCATCCATCCCAATGACACCCAGACCTTCTGATGTTACTTCAGCTGACACTCAGGACACTTCTTTCTCTACTACTCCTAAAAGGAAAGCCCTGAAATGGAGTCTAGAGAACCCAGAGACAAAGAAACCtagaaaaaaagcttttgataACCAGGTTTTGTTCTTCAGCAATGCTAGTGATGCTATTAAAGCAGAATGTAAAGACATTAAAACAGCACTGAAGGATGACGGTGATGATGTGATTGACAAGAGCATGATGAAGGAGGAGCAGAGCAATAAAATCATACCGACCAGCTCTAAGGACCAGCAGAACTTCAAAGTGCTGTACCTGCAGGCATTGGAGGAGATAAAGCAGCTTCAACATAAGAGCTTGAAACAGCAATTAAATAAAGAGCCAAAGGAAGAGGTGGACAGTCTCAAAGATGAGAAGAACAATTTGTTGACCAGCTATGAGCGGCTGCAGAAAGATTTAGAGGACgtgaagagagaaaatgaaaaggtgATGGTAAGATTAGAAGATCGAGGGGTCCAgacagatttttatatttggaaCCAAGAAGAGTGTGCAACAAATTCAGCAGAAACCTCAAACCCgagaagagaacaaaaaaaagacttacAACTTTGGACATGGATGGATGAGACACAGGACAGATCgggcgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304776.1 True 2139 mRNA 0.45 16 8804575 8831096

Neighbor

gene id symbol gene type direction distance location
LOC117597332 NA coding downstream 383 8803268 ~ 8804192 (-)
LOC117597333 NA coding downstream 1347 8801507 ~ 8803228 (-)
LOC117597418 morc3,LOC108266382,LOC108266383 coding downstream 3375 8794686 ~ 8801200 (-)
LOC117597417 NA coding downstream 36719 8764514 ~ 8767856 (-)
LOC113526244 NA coding downstream 41953 8734537 ~ 8762622 (-)
LOC113526236 NA coding upstream 1612 8832708 ~ 8839197 (-)
LOC113525956 LOC108266383 coding upstream 67674 8898770 ~ 8920185 (-)
dop1b dopey2 coding upstream 103580 8934676 ~ 8966032 (-)
atp5po atp5o,LOC107569847,LOC107748167,LOC107595838 coding upstream 151123 8982219 ~ 8987453 (-)
vangl1 LOC108267010,LOC108432602,LOC103036576,LOC107719814,LOC107731768,LOC107690494,LOC107690599 coding upstream 222426 9053522 ~ 9077426 (-)
LOC117597335 NA non-coding downstream 29172 8772623 ~ 8775403 (-)
G79227 NA non-coding downstream 130824 8668115 ~ 8673751 (-)
G79223 NA non-coding downstream 136832 8667217 ~ 8667743 (-)
G79220 acp6 non-coding downstream 140160 8662928 ~ 8664415 (-)
G79184 NA non-coding downstream 189533 8614805 ~ 8615042 (-)
G79360 NA non-coding upstream 102849 8933945 ~ 8934415 (-)
G79414 NA non-coding upstream 211652 9042748 ~ 9043426 (-)
G79507 NA non-coding upstream 317801 9148897 ~ 9149193 (-)
G79488 NA non-coding upstream 327849 9158945 ~ 9159274 (-)
LOC113525875 wap65-1 non-coding upstream 350571 9181667 ~ 9195988 (-)
G79349 NA other downstream 32146 8771466 ~ 8772429 (-)
si:dkey-229b18.3 LOC108266764 other downstream 121160 8674804 ~ 8683415 (-)
G79221 NA other downstream 138996 8664690 ~ 8665579 (-)
G78626 LOC108266388 other downstream 1056937 7744726 ~ 7747638 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other downstream 1254944 7544506 ~ 7549631 (-)
LOC117597331 NA other upstream 26723 8857819 ~ 8877236 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other upstream 165687 8996783 ~ 9019448 (-)
cnga4 cnga4 other upstream 268440 9099536 ~ 9148647 (-)
LOC113525856 mob4,hspe1,LOC108266284,LOC106582314,LOC106586370,LOC105016277,LOC101078365,LOC101472107,LOC104932517,LOC103156730,LOC106530744,LOC100701317,LOC102310674,LOC103391647,LOC108238849,LOC107690609,LOC107731766 other upstream 689633 9520729 ~ 9531671 (-)
G79826 NA other upstream 737459 9568555 ~ 9569120 (-)

Expression


Co-expression Network