LOC117597417


Basic Information

Item Value
gene id LOC117597417
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 8764514 ~ 8767856 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304770.1
ATGCCTAAGGCCAAGGACAAAACGAAACTGAAACCGGTCGAGAGCGCGGAGCACGcagagtcggctctcgagggagccggctgctcGCATTGCGAGCGTTTGCCGCTGCGCGTGCTTCGCTCCCAgaaggctctctttgaggagggaacCTTCACTCGCGagcctcgcggtgccggccccgcttctgccgaggcagagcggcgtcTGCATTCGTGGGGCTCGCAGCTAgatctggcggagggaatggagacggatcTACCGTCCGCTCTCTGGGTTCGGAAGCatgctctgcggtttcttccccgggGGGCGGGCCGGCGCCCGCCGCCTGTCTTCCTCCGAGAAGGTTGGCGTGGAGGCGCCGatcctgagccgcagtctccccaatatgaggagctgctggaggtggtttcGCGGGCCGTCGCTAAGTTGAGTATCGACTGGCTCGCTGACACTCGGGTTTCGCCGGTGAAGgctccggtgCTGCCCACTAAGCCGTTTGCGTACCACCTCGGCTTCGTGGGCAAAAGCGTCTGCACGCTGCAGCGGgcgtaccaggccgacctactcaaagagctggatgagGGGGAGATGCCGTCTGAGCACCTGGAGGAGCTCAGGCGGACCGCTGACCTTtccctccgcgccaccaaggagaccGTACCAACAGGCTCAAGGCTCAGGCTGCGGCCTTTCAGCGGTTTCTCCTCATTAAGcctcgtggggctgctgggcggggcAGCCCCTCCGTGTCTGGTCGCCTCCCATAGGGAGGCGCAGAAACAGAAACatcgcctcccgtgctcccccgagGCcggtctgccaaccctgccacctacggtgcttcagggcgcagccgTCTCCGGCGAGCGCTTCTCCCAGCTCCCTCCcggcaacgtagcgggtctgggaggctcgcggcctcctTGGAGGCCTGCCGAGCAGCTAGCCCGGGTGTTCCCTGTCGGTTCGCCGCTCCAGGGCGCCAAGCTAGCCGCTTCTGTCAtgccagaggtcagtctcgagagcctgatccccttagtgagctttttggcagcgtggaaacttctgccgaatgtgtctcagtgGGTCCTGCGTACCATAGAGAGAGACTACCGAATCCAGTTCGGCTTTCCTCCGCCTCGTTTCTCCGGGGTTCTTCCCACCTTGGTGGGCCTCGTGCAGGTTCTGGtgatggaacaggaagtgtgcactctcctgaggaaggaggccatcgaggtggtccctcctcacgacagagagtccggcTTTTACAGCCgctacttcattgttcccaagaaggatGGGGGGCTGCGTCCTATCTTGGACTTGCGGcagttgaacctctcagtcgctcgactgaagttcaggatgctcacggtcactcaggtcgtgcctcagatcaggtccgaggactggtttgtcacgatcgacctaaaagatgcatatttccatatctccatccttccccaacacaggaagttcctgaggttcactttcgggggcgaagcttaccagtattGGGTTCTTCctttcggcctagcactctcaccccgcaccttcacaaagtgtgtggatgctgctctgacTCCTAtgcgactccagggcatccgcatactgaactatattgACGATTGGTTTATATTAACTCGATCAGAGCAGTTGGcggttcggcatcgagatgtcgttctcacCCACATGAAGAAACTGGGGTTAAGGCTAAATGCCGGGAAAAGTGTTGATGGCAGCAGCtggtggctcaagaccagggggttctccctgaggggaaaTCTGCTCCGGATGATCAGAGTCACGAGGCGGTGCCTGCGGGCTCTAGACATGTGGAGGAAGCCTGgcttcttgtctcagggcccggtgctgggagctcctggtcgccgctTAATGCTAGCGATGGACGCGTCCCTCACCGGTTGGGGAGcagtcatgagtggccgctcaCCCCATGGTCTGTGGAGTGGCCACcgtctcacttggcacatcaactgcctggagatgctggccgtgctTCTAGCACTAAAACATTTTCTCCCGGACCTAAGAGGTCgtcacgtgttggtgcgcaccgacaacacggcaGTGGCCTATTatatcaaccaccagggaggtctgcgttcgtgccccctttacaggctggcgctccagatccttgtgtggtcccagggaAAGCTCCTTTCACTGAGAGCAGCTTATATCCCTGGCCGTCTTAATATGGGAgcagacgccctgtcgaggcaggggccgatccccggggaatggagactccaccccgaggtggtggagcagatatggcgGGTGTTCGGTCGAGCTCAGGTCGACctgtttgcgacgcaggagacgtcgcactgccccctttggttctctctgactcatccagctcccctGGGACTGGATGCTATGGCACGGgcgtggccgaggctgcgtctgtacgcctttctggagagagtgcgctgGGACGGGGTCCACCTGTtgctagtagccccgttctggccgggccgagcgtggttctcggacctgatttcccttctcgacggctctccatgggagattcccgtgaggagggacctcctctcacaggcggggggcgaCATCCTTCACCTCCGCCCGGAGTTGTGa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304770.1 True 2634 mRNA 0.61 7 8764514 8767856

Neighbor

gene id symbol gene type direction distance location
LOC113526244 NA coding downstream 1892 8734537 ~ 8762622 (-)
LOC113523849 LOC108266382 coding downstream 36066 8712745 ~ 8728448 (-)
chaf1b chaf1b,LOC107579096 coding downstream 55917 8696385 ~ 8708597 (-)
gja8a gja8 coding downstream 139864 8617862 ~ 8624650 (-)
cmss1 cmss1 coding downstream 309675 8442843 ~ 8454839 (-)
LOC117597418 morc3,LOC108266382,LOC108266383 coding upstream 26830 8794686 ~ 8801200 (-)
LOC117597333 NA coding upstream 33651 8801507 ~ 8803228 (-)
LOC117597332 NA coding upstream 35412 8803268 ~ 8804192 (-)
LOC113526237 NA coding upstream 36719 8804575 ~ 8831096 (-)
LOC113526236 NA coding upstream 64852 8832708 ~ 8839197 (-)
G79227 NA non-coding downstream 90763 8668115 ~ 8673751 (-)
G79223 NA non-coding downstream 96771 8667217 ~ 8667743 (-)
G79220 acp6 non-coding downstream 100099 8662928 ~ 8664415 (-)
G79184 NA non-coding downstream 149472 8614805 ~ 8615042 (-)
LOC117597396 NA non-coding downstream 158317 8590813 ~ 8606197 (-)
LOC117597335 NA non-coding upstream 4767 8772623 ~ 8775403 (-)
G79360 NA non-coding upstream 166089 8933945 ~ 8934415 (-)
G79414 NA non-coding upstream 274892 9042748 ~ 9043426 (-)
G79507 NA non-coding upstream 381041 9148897 ~ 9149193 (-)
G79488 NA non-coding upstream 391089 9158945 ~ 9159274 (-)
si:dkey-229b18.3 LOC108266764 other downstream 81099 8674804 ~ 8683415 (-)
G79221 NA other downstream 98935 8664690 ~ 8665579 (-)
G78626 LOC108266388 other downstream 1016876 7744726 ~ 7747638 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other downstream 1214883 7544506 ~ 7549631 (-)
LOC117597373 NA other downstream 1312953 7449048 ~ 7451561 (-)
G79349 NA other upstream 3610 8771466 ~ 8772429 (-)
LOC117597331 NA other upstream 89963 8857819 ~ 8877236 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other upstream 228927 8996783 ~ 9019448 (-)
cnga4 cnga4 other upstream 331680 9099536 ~ 9148647 (-)
LOC113525856 mob4,hspe1,LOC108266284,LOC106582314,LOC106586370,LOC105016277,LOC101078365,LOC101472107,LOC104932517,LOC103156730,LOC106530744,LOC100701317,LOC102310674,LOC103391647,LOC108238849,LOC107690609,LOC107731766 other upstream 752873 9520729 ~ 9531671 (-)

Expression


Co-expression Network