G94735


Basic Information

Item Value
gene id G94735
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6242589 ~ 6243616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU112513
TTTCAGGCCTGTGAATGGTGTTCATTGTTCACAAATTAGCATGTACCTCCTCTTTAACAGTTGAACACTGAATATTATGTTCGGTGTCTGTAAAGACAGGTAACAAATTACAAGAAAAACCAAAGTGTCTAAGTAAGGTGTTGGGCAACCTTACTGTTCTTGCTGACAGTTTAATCACATGCTGCAGAGCATGGTAGGATGTTAATTGCTTAATGGCATCATGCAGTACACCTGTCTGGAAGCATCTGCACTCATTAAGTTTCTTTATTCAGGGTTTTCCTTCCATTTGTTGCCTTTCTGTATACGTACATGTACAAATGTCTGTGGATTTTGcttcatgttttatgttttcagCAACAGGATATATCCACATGTGATTTGACATAAGCTTGTTGATTCTCCAGATCACATTTCCAGATtccagaggtgccaacatctacAGTTTAGCTGTAACAATCACCATTTTAACCCCTTGCTAAGGAGACACCTAAAACTCTACTCTAAGCAGCTCAGATAAAATTCTCCTGGCTGAAGAGACAATTCACTGAATGGGAAAAGACGAGGCACATGAAAGATTTTTGCTTCTGGGAGTAGTTACTTGCCCTAATTTTATCTAAGTGAACTTTaacctgtgaattcacaagtTCTGTCTTGTGAGACAATGGAAATCGAGAAAGTGggactgtggtctctttggtcagaaaaaaaatgagttgCTTATTAAGTAGTGCTTACACTGAACTTTTGCCTCAGTGTTTACTTACTGTTGCTTGCTGTGCATCTGAAAAAGTCTTGTCCACTAATGTGCTCggatttttgtggtaaaattatttttttttctctctgcttgctaggattttcttgtcaGCAATGTTGGCACAGGCTAGCAGCATTACAGCATGCTTTATTCTAATCGAGAAAACTAATAacatgcataaaataaaatacaactgTGTCAGTGAAACAGGGGGCAACTTGGGCAAGTGTGCTTCATTGAGGCATCCAGCAAGAAATATTACTAAATGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112513 True 1028 lncRNA 0.39 1 6242589 6243616

Neighbor

gene id symbol gene type direction distance location
trnam-cau_19 NA coding downstream 48442 6194075 ~ 6194147 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding downstream 71470 6048476 ~ 6171119 (-)
LOC113534754 LOC108264847 coding downstream 199786 6031416 ~ 6042803 (-)
chst8 LOC108264863,LOC108264314 coding downstream 314291 5924531 ~ 5928298 (-)
LOC117597570 NA coding downstream 433072 5807422 ~ 5809517 (-)
kirrel3b LOC108264823,LOC108434141,LOC103024239 coding upstream 233336 6476952 ~ 6680208 (-)
trnap-agg NA coding upstream 621652 6865268 ~ 6865339 (-)
ets1 ets1,LOC106581098,LOC106612966 coding upstream 749520 6993136 ~ 7035230 (-)
LOC113534626 LOC108264086,LOC108264449 coding upstream 846357 7089973 ~ 7092426 (-)
LOC113534708 LOC108264086,LOC108264449 coding upstream 867143 7110759 ~ 7113794 (-)
G94734 NA non-coding downstream 429 6240617 ~ 6242160 (-)
G94733 NA non-coding downstream 2063 6240201 ~ 6240526 (-)
G94732 NA non-coding downstream 2841 6238681 ~ 6239748 (-)
G94730 NA non-coding downstream 9350 6233005 ~ 6233239 (-)
G94728 NA non-coding downstream 11424 6230856 ~ 6231165 (-)
G94736 NA non-coding upstream 115 6243731 ~ 6244083 (-)
G94737 NA non-coding upstream 950 6244566 ~ 6245381 (-)
G94738 NA non-coding upstream 1911 6245527 ~ 6245789 (-)
G94740 NA non-coding upstream 4321 6247937 ~ 6249241 (-)
G94741 NA non-coding upstream 6389 6250005 ~ 6250873 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 456158 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 599640 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 2021982 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 2068995 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 2169056 4070800 ~ 4073533 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 902884 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1194475 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 2152196 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 2931039 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 3507266 9750882 ~ 9772020 (-)

Expression


Co-expression Network