zmynd12 (zmynd12,rimkla,LOC106567384,LOC101062827)


Basic Information

Item Value
gene id zmynd12
gene name zmynd12,rimkla,LOC106567384,LOC101062827
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10543919 ~ 10563561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU153993
TGTGTGGTTGCTCTGTATGGTGTTTCAGCTGACACCTTCACTTATGCAGAAATGTGatgtttgtatgtatttagATGTGGCACATTGTGCAGAGGTGAATCGGATGTTGAGCGTGATGTTAGAGGCTCAGCAGCAGGATGTAAATACACATCCTGCTTACAGCACCACACTGGCTCACTCTCTAGGTCAGAGGGCGTTGCTTTCTCACTCACTCGCCATGCTCTGGTTCCTCTGCAATGACCACAAAAAGgcgCTGGACTTTGGCAGGAAGGCAGCCGAGTTTAGCCAGCAGTGTGAACACAACAGCCTGGCTGAGTCCATTCAGAGTCTTATACAACAAGCAGAAACACACCTCAACCCAGAACAAACACCCATCATTCACCACTAACTAATACATTCAACACTCATATACTAACACACTTAATAATAACCAgtacactcaacactcaacacacaccccTGACTAATCATAAAGCACCTAGCCCTCATAGATTCACTGCTTACTCATAACCTCAATATAAAGATGTGCATAGCACTCACAGTCctcaaatatataaattacacaattaaaaaaaaatactgttctGTCAAACATCTTAATCGCATGTCTGTAGAGGAAATGTCTAGAcattgtgttggtgtttgtttctAAGTATTGATTAGTAGCTGATGGTGTATTGTAAATCAGAATGGTGTTAAATAAGAGCACAAGCCTCTGATGCATGTTTCATGttccagacatttttaaatgtcctttttattaatattataattattcttattcttattattagaATATTATAACATACAACATTGATGTTAGTGTTCTAACACTAATAGGTTCCCTAGTATTATATAACATTGCTGGTTTTTGGCATTCAGGGGGGAACGTCTaacttaaacaaacaaacaaaagaaaatgacgAGGCAATGAAATGTAGTTATCTGGAGTCTGCTCATTTTCCTTTTACATCCTGGAAATCAACAGAACTGAACATTAGCAgcaattttacattattaagtAATGAGTAAATGCCATTTTCTCAGTCTCTTGTTAGTAGAGTGGGCAACGGAGTGGTACCATGTCAAAATGGTGTCTGCTCAGGTTTGGCAAATAATTTATTGCACCAAATTCCTCTGCCTTTCACACATTTCTCTAATCATGTTTTGCTTAATACTTGATGCTCTATAACCTCGAATGTCTTACCACTCCCTTTAATCACAGGTGTTGTTTTGGAATCATGTTTTTAACAACACAATAAAAAGCTAAAGGAGCTCTGCTGCTCATGTTATTGGCTCCCATGACAGACGGAAGGAGCGAGTGTGTCCGGTTGCTTAGTTACCATTCAGTCCGCTGATGGATGATGGAACACATCACATGGTACAGCAAATCACAACATGGAGGATggggaggtgtgtgtttgtgtgtgtttcagctgttAGATGTCTTTGTTAAAGCATTCCACTAAAGCTCACCACCAGTCAGAGATTAGTGCACACAAACCAGtcttatcattaaaaaaagaaccatgaaaacactgaacaatagaaaacaagcaacaacaacaaaaaaaaaaaaaaaaagtgcatgatTACATTAATGGTACAAGCATTTCTTTAGTTGTAGGTTGATACACAGTATAAGCAGATCTGTTTTAGGATGGGTCAGGGGAGGAATTTGATCCAGGCTGCTTCCCTGAGTTTAATGAACCTCAATGTTTACTACAACAAAATTCTACTTCAagtttgaaatgttttgaattcaTCAGGATTTTGAGtgttgtgtgaatgtaaacaacTTTCTCTGTATTCTGACGTGTAAACATAAAACGAATCCGAGTTCAGATTATGAGTTTGGTCCATACTGTAAATGAGTTAAATGCTAAGACTCAGTGTGAAGTTGAACTCTTGAGGTGAACTGCATCCAAATGTGATCTCTGAATTCAGAGAATTGCTTCCAAACATGCAGACAAGAGGAGGACATTTCCAGCTTTACCAAAAATtaaacatctttattttctgAACAGCACCAGTCTGTACACCAGTGGGTTGAACCCATTTGAGTTGATAGTTCATTTTATTGTTGATGCCTTACAAAGAAATTTCAAACAGCTTTTAAGATTTTAgtgttggcaaaaaaaaaaaggtcatttgGATATACGGTGCAGTATGCATAAGCCTAATAAGCATTCATCATACATAATACTTGTTCTATGTAGCTCACTGCTCAGATGCTAATAGTGAGAGGGGGTGAAGTAAACATTGGGTGTGGCACATACTGCACATGCAGGTCTGTACAGGTATTGACTAGATGAGTGAGTGTTGTACATTTAAACGCATACTTGTTTTTATCTCTTGCTGAATGCAGCCGCTCCCTGAATGGTTCAGAGTGGTTCCAACACTCCAGCCTAAAATGGGGAACAGTAGGTAATCTAAACTGGCTGACTCATTAACCAAACTGTCCCATAGTGCCACTGAATTGGGGAGAGGGGAGCAAAATGCTCTTCTTAAAGAGGCATTTAAACACATTCAATTTAGGTGTTGTCTTCTATTATCTACTTTGCTTTCTGCATACTGTAAGAAGACAGCACAAAGTCTGTCATCCTGACAcctattaaatgaaaaaaatataaattaaaaaaaaaaaaaaacagatgaactgCCAAAGTGTTGGTGTATCCAAGTGCTGATCTAGCACCCGCTCCAATTTCTACCCAACTAAGTTGAACATCTAAAATACAAAAACGTAAGACTTGTTCCAGGTCAAGAGTAAAATCTTAATTACCCTAaatgaggtgtgtttgtgtgacagggcgttttttttaaaatgcagacaAGCACTGAAGCTAAAAACATGGTGAATGCATTCttactctgtacaactgtgtacCAGTCCACTGGAATGGGAAGAAAATATGTACAGCTTTTTCAGTCCTTCTTTACGTGTTCATGCTGAtgtgtgaatgtctgtgtgcatatgtgtttgGGAGGGTGAAAACACCCGGTTGGGGCACACATAGACAAACCGTTTTGGGATACCTTCCTTCATGTTAAGTCAATGCATCACACTGCACTGCATGCTTGATAAGCCTTGCAATAGTGTTGGGCTCTCACTAtaccttggtgtgtgtgtttgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgttctcaaaTCTTTTCCAATCTAAAACCACTCTCCAGTACAATGCACCCTGAAATACAGTggcaatcactcactcactgtttgCACTGTTTGAATGCCTGCACTAAGGCTTGGTCAGAGTGTACACTGCACTTTTGCAGTCACTGTCAGGGGAGCAGCCTCAGATCAGCATCAGGGTTTACAGGATGGGTtagtacaaaaacacaaatgtgtgtgtgtgtgtatacgcagTTGACCACTGTATGCATGtgtacatgtactgtatgtgtatgcatatgtatgtacggtgtgtatgagtgtgtttgtgcatgtagtTGCCATTTTCTCTTCAGCTCACTCAGTCAATAGTTTAATCTCCTTTGCGAGGAGGGAGTTGATGTTGTATGCGGGATCGGGCACACTCTGGGTGTGACTTATCTCAACAAGCTCCGCCTCACTCTCGCTGGAGGTGGAGCTAGTGCTCATGGTGCTGACTGCGTCGGGGATGGCGCAGGGTGCGACAGGTGGGCATGCCTCTGGGGGGATACACACTTCAGGCTCACTGCTGGTCTCGCTGGCGCTGGACACCACGGAGAGCAGGGACATCTTGCGGCTAAGGCGGCTGGGCAGCAGCGACAGGGCGTAGTCTGCCACGATACCTGCCACATCGATCCCGCATGCCTGATCAAATGCGATAAAGCCTACATTGGCGTTGGCCTCACAAACCACGAATGAGCCGTCATTTAACTGCAGCAGGTCAATACCACACACGTCCATGCCCAGGATGTTGGACACCTGCACAGCCAGCTGCTTGCCCTGCTCACTCAGCGGGCACATCACACCCACACCGCCTGAAGAAAGAGAGCTGGGCTTAGCAGGTACTTCATTAAGCACACCTTCAACCATATACTCACAGGGCATTTTATCAGTTAGACAGATTTATATTATGAACTATCCAAATATTAGGCTCTTTATGCAAATGTCTACAATATTCTGCCCATTTATTGGAGCTTTTCATTCCTGAACATTCTACTCACAGAATGCATTAGATTCTGGCTGACGTTGTTTGTAGGCCT
>XM_026918303.2
TACAGTTTGTTCAGTTTTCCCTCGATAGACTGCCAGGACATTATACACTTGTATTGTGTGTGGATGAATTAAATTAGCTGGCGAACACTGTATTTAGATTGATAGAcagataaaagtaaaataaaagtaaaggaaaaactAGTAGACATTAGAAACGCAATATAAGTTAGTGTAACTAGCTAAGCCTAcggataataataaaaaaaaaaaaaaagaaagaaagaaagaaaaaagaaaaggatgtCTATGTCCATTTCCCCTCTTGCAAACCCAAAAGGAACGAAGAAACTGTGCGAGCTTTGTCAGAAGCCAGCTCACCTCCAGTGCCCAAACTGCCGTGTGACTTTCTACTGtGATGCTGCTCACCAGCAGGCAGATTGGAATAGCATCCATGAGAAAGTGTGCGAGCTGCTGATCTCTGTACGAACCCCTGCACCATTCTACTGTTTCCAGGCTGACAGAGACTTCCATCATATTCAGACTCTGAAAAAATTGGAGCACATAACAGAGCTCTCCCATGCTGCAGCTAAGAGCTGGGTCTCGGCAGGGAAGTACAGCGAGGCGATTCCAGCAGCTCAGCTCTCCCTGCGCTGTGCTATTGACATTTACGGCCCTGATGTTGTTGAACTGGTGCCAGCCTACTTGCTGCTTGCCGAGGCCAGTATAGGTTTAGGTTCTCTGTCTCAGGCCGAAAGCTGTCTCTCACAGGCAGAGTGGATGGTGATGAAGAATCCAGGCTGCAGTCGGACAGTTCTTCATTTGCTCCACAGAACCCTGGGCCGCTTGTACTCAGCCACAGGAGACTACAGTTCTGCCCTGTTGCACTTCGCCAATGATGTGTACTATGCGAGTGAAGAGTTTGGTTTGGACAGTGTGGTGACGGCTGGAGGCTATTTCTTGATGGCAAATGTGTTCATGAAACAAGAGAAGACAGATATTGCAAACTCACTTTACTCAGAGGTTGCTAGTACGTGGCATGCTCACCTGTCTAAGTTGATGGAGAGTTACAGTCAGAAGGAACATGAAGGAGCACAATACTTTGATGTGGCACATTGTGCAGAGGTGAATCGGATGTTGAGCGTGATGTTAGAGGCTCAGCAGCAGGATGTAAATACACATCCTGCTTACAGCACCACACTGGCTCACTCTCTAGGTCAGAGGGCGTTGCTTTCTCACTCACTCGCCATGCTCTGGTTCCTCTGCAATGACCACAAAAAGgcgCTGGACTTTGGCAGGAAGGCAGCCGAGTTTAGCCAGCAGTGTGAACACAACAGCCTGGCTGAGTCCATTCAGAGTCTTATACAACAAGCAGAAACACACCTCAACCCAGAACAAACACCCATCATTCACCACTAACTAATACATTCAACACTCATATACTAACACACTTAATAATAACCAgtacactcaacactcaacacacaccccTGACTAATCATAAAGCACCTAGCCCTCATAGATTCACTGCTTACTCATAACCTCAATATAAAGATGTGCATAGCACTCACAGTCctcaaatatataaattacacaattaaaaaaaaata
>XM_026918310.2
GGAACTGTTTCTCTccccagcagtgacactgaagtatttaataataataataccagcATTGCCTAATACATGTACAACAGTGGAACACCACCATGGCATTAGTGTAGAAAAAAGGTCcatgaaaatgtttgaaatgggGAACAAAGAGTCACTTAATCGCAACAAGAAGTGATTGGTAAATTACACCCAGAGAAAACCTGAACTGAAAGAATGAAGCTGGGTGAGTCCACAATCGGAACGAAGAAACTGTGCGAGCTTTGTCAGAAGCCAGCTCACCTCCAGTGCCCAAACTGCCGTGTGACTTTCTACTGtGATGCTGCTCACCAGCAGGCAGATTGGAATAGCATCCATGAGAAAGTGTGCGAGCTGCTGATCTCTGTACGAACCCCTGCACCATTCTACTGTTTCCAGGCTGACAGAGACTTCCATCATATTCAGACTCTGAAAAAATTGGAGCACATAACAGAGCTCTCCCATGCTGCAGCTAAGAGCTGGGTCTCGGCAGGGAAGTACAGCGAGGCGATTCCAGCAGCTCAGCTCTCCCTGCGCTGTGCTATTGACATTTACGGCCCTGATGTTGTTGAACTGGTGCCAGCCTACTTGCTGCTTGCCGAGGCCAGTATAGGTTTAGGTTCTCTGTCTCAGGCCGAAAGCTGTCTCTCACAGGCAGAGTGGATGGTGATGAAGAATCCAGGCTGCAGTCGGACAGTTCTTCATTTGCTCCACAGAACCCTGGGCCGCTTGTACTCAGCCACAGGAGACTACAGTTCTGCCCTGTTGCACTTCGCCAATGATGTGTACTATGCGAGTGAAGAGTTTGGTTTGGACAGTGTGGTGACGGCTGGAGGCTATTTCTTGATGGCAAATGTGTTCATGAAACAAGAGAAGACAGATATTGCAAACTCACTTTACTCAGAGGTTGCTAGTACGTGGCATGCTCACCTGTCTAAGTTGATGGAGAGTTACAGTCAGAAGGAACATGAAGGAGCACAATACTTTGATGTGGCACATTGTGCAGAGGTGAATCGGATGTTGAGCGTGATGTTAGAGGCTCAGCAGCAGGATGTAAATACACATCCTGCTTACAGCACCACACTGGCTCACTCTCTAGGTCAGAGGGCGTTGCTTTCTCACTCACTCGCCATGCTCTGGTTCCTCTGCAATGACCACAAAAAGgcgCTGGACTTTGGCAGGAAGGCAGCCGAGTTTAGCCAGCAGTGTGAACACAACAGCCTGGCTGAGTCCATTCAGAGTCTTATACAACAAGCAGAAACACACCTCAACCCAGAACAAACACCCATCATTCACCACTAACTAATACATTCAACACTCATATACTAACACACTTAATAATAACCAgtacactcaacactcaacacacaccccTGACTAATCATAAAGCACCTAGCCCTCATAGATTCACTGCTTACTCATAACCTCAATATAAAGATGTGCATAGCACTCACAGTCctcaaatatataaattacacaattaaaaaaaaata

Function

symbol description
rimkla Predicted to enable N-acetyl-L-aspartate-L-glutamate ligase activity and citrate-L-glutamate ligase activity. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Orthologous to several human genes including RIMKLB (ribosomal modification protein rimK like family member B).
zmynd12 Predicted to enable metal ion binding activity. Orthologous to human ZMYND12 (zinc finger MYND-type containing 12).

NR:

description
zinc finger MYND domain-containing protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153993 True 4241 TUCP 0.41 2 10556518 10563561
XM_026918303.2 False 1547 mRNA 0.45 8 10544826 10559899
XM_026918310.2 False 1505 mRNA 0.46 9 10543919 10559899

Neighbor

gene id symbol gene type direction distance location
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding upstream 2147 10513439 ~ 10541772 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding upstream 263985 10168385 ~ 10279934 (+)
mov10b.2 LOC108265909 coding upstream 466398 10056229 ~ 10077521 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding upstream 512731 10013340 ~ 10031188 (+)
cttnbp2nlb cttnbp2nl coding upstream 578823 9934292 ~ 9965096 (+)
kazna kazn coding downstream 67920 10631481 ~ 10681269 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding downstream 180164 10743725 ~ 10790914 (+)
slc5a9 slc5a9,LOC107757988 coding downstream 311849 10875410 ~ 10883004 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding downstream 319974 10883535 ~ 10894051 (+)
dnttip2 LOC102796155 coding downstream 331878 10895439 ~ 10902076 (+)
G130415 NA non-coding upstream 19220 10519440 ~ 10524699 (+)
G130285 NA non-coding upstream 396785 10085561 ~ 10147134 (+)
G130231 NA non-coding upstream 510354 10033350 ~ 10033565 (+)
G130021 NA non-coding upstream 828051 9715656 ~ 9715868 (+)
G129996 kcnd3 non-coding upstream 871584 9672067 ~ 9672335 (+)
G130459 NA non-coding downstream 190239 10753800 ~ 10762869 (+)
G130492 NA non-coding downstream 298843 10862404 ~ 10862638 (+)
G130608 NA non-coding downstream 344793 10908354 ~ 10908717 (+)
G130609 spata6 non-coding downstream 346332 10909893 ~ 10910207 (+)
G130611 NA non-coding downstream 347603 10911164 ~ 10911375 (+)
G130390 NA other upstream 185604 10357946 ~ 10358315 (+)
LOC113532719 LOC108265185 other upstream 878226 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 1072640 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 2231263 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 2572170 7968235 ~ 7971749 (+)
tmem51a tmem51 other downstream 119517 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 143158 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 306558 10870119 ~ 10874126 (+)
LOC113530800 LOC108266038 other downstream 1058741 11622302 ~ 11633844 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other downstream 1113950 11677511 ~ 11696791 (+)

Expression


Co-expression Network