mrpl55 (mrpl55)


Basic Information

Item Value
gene id mrpl55
gene name mrpl55
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10870119 ~ 10874126 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU154218
GTAGTAATTCTGCGAACACCTCACATGCGTTTGTATGTTGACCTTTTCTCCATCCTCTGTATGGATTTGTAACTTATTTTGTACATGTAGACGGTAAAAAGCGCATGTTAGAGTTATAACTATGGCTCTGAATAAGATACAGACGTATCATCGGAGTATGTTCAGAGTAAATGGGGACCATGAAATGCCACCACAACTGAGAAGTTAACTTGGGGTATTCTTCTCAAATCCGACTTCCTTCCCCGTTTACAGattgacgtcaaatcaacatggctgcacacagcatcagaaataaacaaaaGTGTCTCCAGGAAGTGATATCTCAGAGATGTTTACTTGCTGTGTCCTCATTTCACACCACAAGAACTCAGTCAAACTCCAACAGATCCTCTGTGGTTCGCTGTAGCAGAGAGAAATACGAGCGCATGTACCCAGTCTTGCTCGTGCGTCCGGACGGCTCTACCATTAATATCAGATACAAAGAACCTCGGAGAATTATAATGatgCCTGTGGACATTACTACTctgtcagaggaggagagaaaggcCAGGATGCGAAAGAAGGATCCTAAGAAGGGAGTGGCTAAACGAAAAGATGATGAGTTTGAGGATGACTTTAAACTGGAGGACTACAGCAAGTTCTGGAAGAAAACATGAACAGACTGG
>XM_026922991.2
GTTTCTGCACGGTAGTAATTCTGCGAACACCTCACATGCGTTTGTATGTTGACCTTTTCTCCATCCTCTGTATGGATTTGTAACTTATTTTGTACATGTAGACGGTAAAAAGCGCATGTTAGAGTTATAACTATGGCTCTGAATAAGATACAGACGTATCATCGGAGTATGTTCAGGTGTCTCCAGGAAGTGATATCTCAGAGATGTTTACTTGCTGTGTCCTCATTTCACACCACAAGAACTCAGTCAAACTCCAACAGATCCTCTGTGGTTCGCTGTAGCAGAGAGAAATACGAGCGCATGTACCCAGTCTTGCTCGTGCGTCCGGACGGCTCTACCATTAATATCAGATACAAAGAACCTCGGAGAATTATAATGatgCCTGTGGACATTACTACTctgtcagaggaggagagaaaggcCAGGATGCGAAAGAAGGATCCTAAGAAGGGAGTGGCTAAACGAAAAGATGATGAGTTTGAGGATGACTTTAAACTGGAGGACTACAGCAAGTTCTGGAAGAAAACATGAACAGACTGGCTTACTTCATTCAGCATATTTATGCTGCTTCACATGTACAGAACTTacgctgttgtgtttttttgtttatcatcAACTCATTAAAGATTCTTAAAACCACAGAAGTTaa
>XM_026923001.2
CGTTTGTATGTTGACCTTTTCTCCATCCTCTGTATGGATTTGTAACTTATTTTGTACATGTAGACGGTAAAAAGCGCATGTTAGAGTTATAACTATGGCTCTGAATAAGATACAGACGTATCATCGGAGTATGTTCAGAGTAAATGGGGACCATGAAATGCCACCACAACTGAGAAGTTAACTTGGGGTATTCTTCTCAAATCCGACTTCCTTCCCCGTTTACAGattgacgtcaaatcaacatggctgcacacagcatcagaaataaacaaaaGTGTCTCCAGGAAGTGATATCTCAGAGATGTTTACTTGCTGTGTCCTCATTTCACACCACAAGAACTCAGTCAAACTCCAACAGATCCTCTGTGGTTCGCTGTAGCAGAGAGAAATACGAGCGCATGTACCCAGTCTTGCTCGTGCGTCCGGACGGCTCTACCATTAATATCAGATACAAAGAACCTCGGAGAATTATAATGatgCCTGTGGACATTACTACTctgtcagaggaggagagaaaggcCAGGATGCGAAAGAAGGATCCTAAGAAGGGAGTGGCTAAACGAAAAGATGATGAGTTTGAGGATGACTTTAAACTGGAGGACTACAGCAAGTTCTGGAAGAAAACATGAACAGACTGGCTTACTTCATTCAGCATATTTATGCTGCTTCACATGTACAGAACTTacgctgttgtgtttttttgtttatcatcAACTCATTAAAGATTCTTAAAACCACAGAAGTTaa
>XM_034306370.1
ACTTGTTTCTGCACGGTAGTAATTCTGCGAACACCTCACATGCGTTTGTGTCTCCAGGAAGTGATATCTCAGAGATGTTTACTTGCTGTGTCCTCATTTCACACCACAAGAACTCAGTCAAACTCCAACAGATCCTCTGTGGTTCGCTGTAGCAGAGAGAAATACGAGCGCATGTACCCAGTCTTGCTCGTGCGTCCGGACGGCTCTACCATTAATATCAGATACAAAGAACCTCGGAGAATTATAATGatgCCTGTGGACATTACTACTctgtcagaggaggagagaaaggcCAGGATGCGAAAGAAGGATCCTAAGAAGGGAGTGGCTAAACGAAAAGATGATGAGTTTGAGGATGACTTTAAACTGGAGGACTACAGCAAGTTCTGGAAGAAAACATGAACAGACTGGCTTACTTCATTCAGCATATTTATGCTGCTTCACATGTACAGAACTTacgctgttgtgtttttttgtttatcatcAACTCATTAAAGATTCTTAAAACCACAGAAGTTaa

Function

symbol description
mrpl55 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in mitochondrion. Part of mitochondrial large ribosomal subunit.

NR:

description
39S ribosomal protein L55, mitochondrial

GO: NA

KEGG:

id description
K17436 MRPL55; large subunit ribosomal protein L55

RNA

RNA id representative length rna type GC content exon number start site end site
TU154218 False 665 TUCP 0.43 4 10870134 10874017
XM_026922991.2 False 649 mRNA 0.41 3 10870123 10874126
XM_026923001.2 True 747 mRNA 0.41 4 10870161 10874126
XM_034306370.1 False 520 mRNA 0.43 3 10870119 10874126

Neighbor

gene id symbol gene type direction distance location
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding upstream 79205 10743725 ~ 10790914 (+)
kazna kazn coding upstream 188850 10631481 ~ 10681269 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding upstream 328347 10513439 ~ 10541772 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding upstream 590185 10168385 ~ 10279934 (+)
mov10b.2 LOC108265909 coding upstream 792598 10056229 ~ 10077521 (+)
slc5a9 slc5a9,LOC107757988 coding downstream 1284 10875410 ~ 10883004 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding downstream 9409 10883535 ~ 10894051 (+)
dnttip2 LOC102796155 coding downstream 21313 10895439 ~ 10902076 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC103028496 coding downstream 345425 11219551 ~ 11288918 (+)
cdkn2c cdkn2c coding downstream 562259 11436385 ~ 11447884 (+)
G130492 NA non-coding upstream 7481 10862404 ~ 10862638 (+)
G130459 NA non-coding upstream 107250 10753800 ~ 10762869 (+)
G130412 NA non-coding upstream 321052 10546979 ~ 10549067 (+)
G130415 NA non-coding upstream 345420 10519440 ~ 10524699 (+)
G130285 NA non-coding upstream 722985 10085561 ~ 10147134 (+)
G130608 NA non-coding downstream 34228 10908354 ~ 10908717 (+)
G130609 spata6 non-coding downstream 35767 10909893 ~ 10910207 (+)
G130611 NA non-coding downstream 37038 10911164 ~ 10911375 (+)
G130618 NA non-coding downstream 42211 10916337 ~ 10916625 (+)
LOC113527270 NA non-coding downstream 70531 10944657 ~ 10948346 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 128694 10706719 ~ 10741425 (+)
tmem51a tmem51 other upstream 173288 10683078 ~ 10696831 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other upstream 306558 10543919 ~ 10563561 (+)
G130390 NA other upstream 511804 10357946 ~ 10358315 (+)
LOC113532719 LOC108265185 other upstream 1204426 9660815 ~ 9665693 (+)
LOC113530800 LOC108266038 other downstream 748176 11622302 ~ 11633844 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other downstream 803385 11677511 ~ 11696791 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other downstream 831421 11705547 ~ 11714032 (+)
foxp3a LOC108265789 other downstream 1105060 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 1322467 12196593 ~ 12230001 (+)

Expression


Co-expression Network