G131962


Basic Information

Item Value
gene id G131962
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13325504 ~ 13325713 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU155905
ATCAGGTTAGCATTGGTTGTGTCAGGCATGAACTCGAGGTGTCAACCTCCCTGGCCTAGTTTCATCACCCACACTCTCATAGCCTTTCACTCTCATACTGATGTGTCCTTAGATTGaggaaacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtttaggcaaCTGGAATGGAGGAATTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155905 True 210 lncRNA 0.47 1 13325504 13325713

Neighbor

gene id symbol gene type direction distance location
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding upstream 100185 13214466 ~ 13225319 (+)
wasb was coding upstream 180297 13136689 ~ 13145207 (+)
slc38a5b slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975 coding upstream 190875 13113706 ~ 13134629 (+)
trnaf-gaa_25 NA coding upstream 261382 13064050 ~ 13064122 (+)
trnav-cac_9 NA coding upstream 263496 13061936 ~ 13062008 (+)
trnae-cuc_18 NA coding downstream 43835 13369548 ~ 13369619 (+)
tpd52l2a tpd52l2 coding downstream 46779 13372492 ~ 13386385 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding downstream 138418 13464131 ~ 13489999 (+)
emilin3a LOC108265066 coding downstream 198008 13523721 ~ 13541674 (+)
magixa LOC108265805,LOC108437579 coding downstream 290891 13616604 ~ 13688929 (+)
G131956 NA non-coding upstream 7998 13317298 ~ 13317506 (+)
G131954 NA non-coding upstream 9841 13315443 ~ 13315663 (+)
G131930 NA non-coding upstream 50409 13274135 ~ 13275095 (+)
G131715 LOC108265908,LOC108442391 non-coding upstream 301658 13022216 ~ 13023846 (+)
G131721 NA non-coding upstream 319414 13003395 ~ 13006090 (+)
G131968 NA non-coding downstream 40167 13365880 ~ 13368176 (+)
G131972 NA non-coding downstream 66812 13392525 ~ 13400280 (+)
G131980 NA non-coding downstream 94992 13420705 ~ 13422214 (+)
G131987 NA non-coding downstream 108204 13433917 ~ 13435294 (+)
G131948 NA non-coding downstream 109788 13435501 ~ 13436958 (+)
rbm15 rbm15,LOC107731203 other upstream 720799 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1095503 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1329652 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1611472 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1628713 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 379453 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 564691 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 624224 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 996459 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1614588 14940301 ~ 14982884 (+)

Expression


Co-expression Network