G131972


Basic Information

Item Value
gene id G131972
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13392525 ~ 13400280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU155919
TGTAAGACTTCTTGATGTCATCAGTGGTGGCCAGTTTGTCGACACCCAGCACATGATAGAGGGATTCTCCAGAGGTGGAGAGGGTGCGCTGCCTCTGCTGCTCAGTCATGGCAATTTACGTTCTTAACaatcttttttttttggcgGCTTCGACAAACTGCGTCTCGGTGTAATTTCAGCGCAGTAACAGTGGTGTTAATTTCGTGGTCGCATCCCCGTGAGCCGCGCGCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155919 True 233 lncRNA 0.52 2 13392525 13400280

Neighbor

gene id symbol gene type direction distance location
tpd52l2a tpd52l2 coding upstream 6140 13372492 ~ 13386385 (+)
trnae-cuc_18 NA coding upstream 22906 13369548 ~ 13369619 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding upstream 39922 13309890 ~ 13352603 (+)
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding upstream 167206 13214466 ~ 13225319 (+)
wasb was coding upstream 247318 13136689 ~ 13145207 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding downstream 63851 13464131 ~ 13489999 (+)
emilin3a LOC108265066 coding downstream 123441 13523721 ~ 13541674 (+)
magixa LOC108265805,LOC108437579 coding downstream 216324 13616604 ~ 13688929 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding downstream 422818 13823098 ~ 13833297 (+)
csde1 csde1 coding downstream 438058 13838338 ~ 13868120 (+)
G131968 NA non-coding upstream 24349 13365880 ~ 13368176 (+)
G131962 NA non-coding upstream 66812 13325504 ~ 13325713 (+)
G131956 NA non-coding upstream 75019 13317298 ~ 13317506 (+)
G131954 NA non-coding upstream 76862 13315443 ~ 13315663 (+)
G131930 NA non-coding upstream 117430 13274135 ~ 13275095 (+)
G131980 NA non-coding downstream 20425 13420705 ~ 13422214 (+)
G131987 NA non-coding downstream 33637 13433917 ~ 13435294 (+)
G131948 NA non-coding downstream 35221 13435501 ~ 13436958 (+)
G131947 NA non-coding downstream 37642 13437922 ~ 13439730 (+)
G132081 NA non-coding downstream 100109 13500389 ~ 13500683 (+)
rbm15 rbm15,LOC107731203 other upstream 787820 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1162524 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1396673 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1678493 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1695734 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 304886 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 490124 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 549657 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 921892 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1540021 14940301 ~ 14982884 (+)

Expression


Co-expression Network