G132420 (mapk4,LOC108265425,LOC107679920)


Basic Information

Item Value
gene id G132420
gene name mapk4,LOC108265425,LOC107679920
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14245576 ~ 14246134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156445
AGTGTGGGTCAACAATGCGTGCCAATCCAAAGTCTCCTATCTTTAGCAGCATCTGCTCGGTGTTGATGAAGATGTTGGCTGGCTTCAGGTCACGGTGCAGCACATTGGCTGAATGGATGAATTTGAGGCCTCGCAGAAGCTGGTAAAAAAGCAAAGTGGCATGGGCCACTGGCAAGGGACCCTGCTCCAATATCCGGGCCAGATCTGTCTCCATAAGCTCTTGCACAATGTAGATCTCTGTAAGTTGGGCAATGGTTGTGAGGTAAAGGCTGGCCACCTGGGCCCAGTGCCTCATACACCCTTACTATGTTCTCATGCTGGAGCCtgcatgtgatttttacttCACGCAGTGCGTGTTTAATGCTCATGGCATCACGCAGTGCCAGCTTCTTAATTGCCACTCGTTGCCCGCTTCGTCTGTCAATGGCAGACAACACCAGGCCGGATGTACCCGTGCCCAGGGGTCGAAGGTCATGGAAGTAACTGCCCAGGTCAAAGCCATATCTGAATGCAAAAGAGCTCCACCTGGCCATTGTTCACAGAGGAGTTGCTCGGTGCG

Function

symbol description
mapk4 Predicted to enable MAP kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; digestive system; otic vesicle; post-vent region; and retina. Orthologous to human MAPK4 (mitogen-activated protein kinase 4).

NR:

description
PREDICTED: mitogen-activated protein kinase 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156445 True 559 lncRNA 0.52 1 14245576 14246134

Neighbor

gene id symbol gene type direction distance location
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 13447 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 73783 14154858 ~ 14171793 (+)
lrif1 lrif1 coding upstream 359909 13879111 ~ 13885667 (+)
apex2 apex2 coding upstream 367616 13873546 ~ 13877960 (+)
csde1 csde1 coding upstream 377456 13838338 ~ 13868120 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding downstream 20491 14266625 ~ 14269429 (+)
prf1.5 LOC108265013 coding downstream 26854 14272988 ~ 14279281 (+)
ap3s1 ap3s1 coding downstream 675009 14921143 ~ 14937444 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 831536 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 889552 15135686 ~ 15147422 (+)
G132405 LOC108265425 non-coding upstream 11322 14233028 ~ 14234254 (+)
G132361 NA non-coding upstream 125161 14116975 ~ 14120415 (+)
G132391 NA non-coding upstream 157695 14085652 ~ 14087881 (+)
G132357 NA non-coding upstream 231955 14010503 ~ 14013621 (+)
G132138 pdzd4,LOC108437581 non-coding upstream 445960 13794582 ~ 13799616 (+)
G132424 NA non-coding downstream 2988 14249122 ~ 14249815 (+)
G132569 NA non-coding downstream 14145 14260279 ~ 14260655 (+)
G132603 NA non-coding downstream 81518 14327652 ~ 14327869 (+)
LOC117597773 grid2,LOC106580171 non-coding downstream 228508 14474642 ~ 14483736 (+)
LOC113529916 NA non-coding downstream 476296 14722430 ~ 14740962 (+)
aopep c5h9orf3,cunh9orf3 other upstream 222889 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 296768 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 454259 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1640871 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 2015575 12196593 ~ 12230001 (+)
G132595 atoh1 other downstream 76038 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 694167 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 733699 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 1132808 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1755927 16002061 ~ 16018818 (+)

Expression


Co-expression Network