LOC117597787


Basic Information

Item Value
gene id LOC117597787
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17386264 ~ 17398372 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158788
tgacaatgtctattgttaaatgtGCTACACAGATAAAATTGAATCGAATTGTATGCCCACAGGTGAGGACCACGCCTGGACTAGGACCACCCCTGGACGCAGGCCACCCCTGGACAAGGACAACCCCTGGACAAGGACTTCCCCTGAATGCCATTGAGGACCAGAGCAAGGACGACATCCAAAGAAGCGGAGGAAGGTGCACATCAACACACAGGTTTGGAGTTCATATTACACATGATTGGTGATGAAGCGCACTGTCGCTTTAAGAGACCCTTGACTTTGGGCGCGTTCTCCCCTCTCTGAGTTCGCGCCAAACTGAGCTGGGAGGAGCTTGTTTCGCGGCTCACAGAGCCAAAGaaGTACACAtactacttctgagatgccagagatgccagtgatcctgaccccttctgctcctcctcgctgtctgacccatcctgatgccccttctgctcctcctcgctgcttgactcaggttggagttctcatcggttgagtttgctcactgctgctggattgctgtttggattgctggggatggcgccacctcggcgctgtggagatggcttggggatcacatatggggagctgtactgtaatggcttgggactgcgattgctgtagtggctttggggctgcagttgccacgagcagcttcgtactcaggactccatcagtggacagtggatagattttaaccaaccggacttcttgcgaaaactgtgatgaatttgcacaattgcactatttgtccttatactacacaataatagaagggatttatttataatcgcactatccgttgcacccagatgaggatgggttcccttttgagcctggttcttctcaaggtttcttcctcatatcatctcagggagtttttccttgccaccgtcgccactggcttgctcattagggataaattcacagtgataaattcaaatatttacaatatatttttgtgaatccatttatttctgtaaagctgctttgtgac
>XR_004578546.1
AATTGAATCGAATTGTATGCCCACAGGTGAGGACCACGCCTGGACTAGGACCACCCCTGGACGCAGGCCACCCCTGGACAAGGACAACCCCTGGACAAGGACTTCCCCTGAATGCCATTGAGGACCAGAGCAAGGACGACATCCAAAGAAGCGGAGGAAGGTGCACATCAACACACAGGTTTGGAGTTCATATTACACATGATTGGTGATGAAGCGCACTGTCGCTTTAAGAGACCCTTGACTTTGGGCGCGTTCTCCCCTCTCTGAGTTCGCGCCAAACTGAGCTGGGAGGAGCTTGTTTCGCGGCTCACAGAGCCAAAGACTTCCAGTTATGGAGTGGTACTGAGAAGACGCGAGTTAACGACCCTcctgtaaatttaaatataaatccttCAAGCTCACTTAAAACTTTGATACATCCTTTGTTATTTAATGCACAAAAGTCTAACAACCGAAATGgcacagaaaaagaagaacagaacTCAAGAAAAAGTGAATAACGAGGCTCGAGATGTCGCAGGATTCTGACTACGCAGACGAACTAAAAGAGATAGAGGAAGATGACGACAGCGAATCTACTAAAGTAACTGAGTTGAACCCCAGCAATGCAGATGTGTTACAAGCCATTAAAGAAATGGACAAACGAGTTATGTGTAAAATTGACGGTGTTATGTCAGTGATCAAAAAGGTAAAGAAACGTGTGAAGGAGGCCAAGCATTTCTGGAGCAGAAGATGAAATCGTTCAACTCGGTGCTTGTGCACATTCCCTTGAATCACAAGTTAAAAAACTGACAGAAAAGGTTGACAACATGGAAAACAGAAACAGACGGAACAACCTGAGGCTGGTGGGtttactggaaaaagaaaaaggaaatgataCGTCTGCGATTTTAGATGCCTGGATTCCCAAAATATTGGAAATGGACTCGAGCACATCGTTAGTTAAAGAGCGCGCACATAGAGTGGGCTCACAACGAAATAAGGATGTTCGGAACAAAAGACGGGATGCCAATACACCACCAAGAACACTAATAATGAAGTTCCTAAATGAAAAGAACAGgtgtttattgtaaaataataactaagtatattcagttattattgttctctgtaaatgtgaaaatgtgtgtttatagtttaatataatATGTGAGAGTAATGTTACAAATAGGGTTGTGATAATAAATATAGACAGAAGTACCTGACAGTTCCTCACGGGTGTGTGGACCAATCAGCGCCATGTACGGAGTGTAAGGGCTGTGGGGTCAAACGCAGTAGTATGGACACTACTGGGAAAATCGGGGTTGTTGTtgaatgttctttaataatagCTGTGTTGTTCGTGATTGactatagttttattttttgcttctCAGTATTTAAGATTGTTGAGTTTGTAAAAGGCAAAATACATCTTAATAGGAAATAATAGGTAAAAGATCATGGGGAGACAGGTCATGTGAAATTTGTAACCTGGAATTGCAGAGGATTgggcaatattaaaaaaaataaagcaggtAATGGATAGGATCGAACAATTACAAGCACAAGTAATTTTTCTTCAGGAAACCCACATGGTAAAAAGTGAGACAATTAAGATTCGTCGGAAATGGCAAGGGCAAGTTTTTGCTGCTTGTCACACTTCTAATGCGAGAGGAGTAATGACTTTAATTCATAAATCAATCCCAATACAGGTTCAGAaagtatacactatacactttatCTTCAGAAAAGataaatttaattaacatttatggtcCAAATGATGACAATcctacattttttaatgatttgtttttgttaattgcTAATTTGCCTGGATACTATCTTATCGCAGGGGATATGAATTGTGTGTTAGATCCTACTAAAGAGAGTTCAGCAGGGACTGATAAAAAACATACTAAAGCCAGGAAGGTGATACAGGAATTTATGAAAGAtcttaatttactttttttaatttacttaattaacTTAATCCTGCAGCGACATCATATTCCTGATATTCTGGTGTGCATCAAACATACTCACGTATTGATTATTACCTAATTTCCGCACAATTGCTTAACAATACAACGGATTGTAGTTATCACAGTATAGTAACCTCTGACCATGCAGCGGTTTCTTTATCATACAAAACtacaaaattcataaaaaatccCCCTAAATGGCGTTTTCAGATAGGATGGCTTCGTGACCCAGAGTTTGTAGAATATGTGGGCAAACAAATTGATTTGtgttttgaaattaataagtcTGAAACATCTGCTTGTATTAGATGGGAAgcattttatgcttttattcgAGGACATATAATTGGGGTTTGCAGTTCAAAAGCTAGGAAGTCTAGACAAGAACTGAAACGATTAGAAGATCAAAtcaaaaaattagaaaataatatttttcagaaaaCTACAGATACAGTAGAAGCAAAagagaaattattattactcaGGTCTCGATATAATGAATTGTCAGCAAGTAGAGCAGCTTCAAAAGTTTTAAGGTTGAAACAAAAATTTTTATGAATATGGAGATAAAACAGGATGGTTACTTGCTTGGCAAATTCGACAACAACAAACAGAGCGTACTATCACAATAATTGAAAGTTCAACTGGAATATAGTTGACACAGTAGAGATCAATGAAGCATTTAGAACTTATTATGAAAAACTATATAGCTCAGAGTGCTCACTAAATGTAGATATCCAGGTGCAATTTTTAGATAGTCTAAATATACCTCAGATTTCAATTGAAAAGAACAAATTATATAAAGACCTAACATTATAAGAAATTGGAGAAGCCATTGACTCTATGAAATCAGGAAAAGCTGCGGGCCCAGATGGGCTTCCTATAGaaatctgtaaaacatttaaaaaaaaaaaaaaagttgctaacTCCTTTTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158788 False 997 lncRNA 0.49 3 17386264 17398372
XR_004578546.1 True 2904 lncRNA 0.37 3 17386300 17390728

Neighbor

gene id symbol gene type direction distance location
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding upstream 33674 17349316 ~ 17352590 (+)
LOC117597835 NA coding upstream 304314 17061058 ~ 17081950 (+)
LOC113524948 NA coding upstream 335984 17037821 ~ 17050280 (+)
cux2b cux2 coding upstream 807575 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 947180 16423733 ~ 16439084 (+)
crb2b LOC108264959 coding downstream 12736 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 213014 17611386 ~ 17621646 (+)
enkd1 NA coding downstream 507432 17905804 ~ 17916639 (+)
polb polb coding downstream 530052 17928424 ~ 17939695 (+)
plat plat coding downstream 689569 18087941 ~ 18118075 (+)
LOC117597877 NA non-coding upstream 8028 17376303 ~ 17378236 (+)
G134344 NA non-coding upstream 30604 17298168 ~ 17355660 (+)
LOC117597810 NA non-coding upstream 55601 17312899 ~ 17330663 (+)
G134303 NA non-coding upstream 152840 17233175 ~ 17233424 (+)
G134301 NA non-coding upstream 175078 17210952 ~ 17211186 (+)
G134466 NA non-coding downstream 212481 17610853 ~ 17611055 (+)
LOC113533142 NA non-coding downstream 301031 17699403 ~ 17714824 (+)
G134516 NA non-coding downstream 338015 17736387 ~ 17736771 (+)
G134521 NA non-coding downstream 340578 17738950 ~ 17739247 (+)
LOC117597839 NA non-coding downstream 458754 17857126 ~ 17861186 (+)
G134341 NA other upstream 89381 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 517496 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 648280 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 764498 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 966755 16402748 ~ 16419509 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 632603 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1037813 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2089115 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2427426 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2782396 20180768 ~ 20185618 (+)

Expression


Co-expression Network