slc38a5b (slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975)


Basic Information

Item Value
gene id slc38a5b
gene name slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13113706 ~ 13134629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917085.2
CACACATGTGCTTTCTCCCCCTGCTCACTTGCTCCCTTCACTGGATCTCTAGTGTCCTCTTTACTTTTGGCTCTTCTTTTGGTTTCTTCTCAATTAGAGTGACAACAAACTTTTCAACCAAGAAACCTTCACAGATTATGCTTTTCCATTTCTACATTTGAGAAAACCTCAACTGCAACTtcaaaagATCAACACTAGgcattttttttcagaccaGCTTTACTAAGACTTATTTCACTTCTCTGTAATAATACACTAAAAGATACAAAGATGGAACTTCAGAAACTATCAAATGGACACCACCAGGAATTCCAGCCTCTGGAAGATGGTTTCTCACCAGAGCAAGAACAGTTTTTACCACATAAGAACAACGGGAAAAAACCCCCTCAGTTTACAGATTTTGAAGGGAAGACCTCATTTGGAATGTCTGTGTTTAACCTCAGCAATGCCATCATGGGCAGTGGAATCCTGGGACTGTCATATGCCATGTCCAACACTGGCATAATTATGTTCCTGTTCCTGTTGATGTGTATTGCTATTCTTTCATCTTATTCTATCCATCTTCTTCTGAAGAGTGCTGGAGTTGTTGGTATTCGTGCCTATGAGCAGCTTGGCAAGAGAGCATTCGGTCACCTGGGAAAAATACTGGCAGCTATTGTCATAACAATGCACAACATTGGAGcaaTGTCTAGCTATCTCTTCATTGTGAAATATGAGTTACCTTTGGTCATTCAAGCATTTTTGGGTCTTCATCATAGCAACGGACAGTGGTACTTGAATGGCAACTATTTGATCATCATTGTGTCTATCTGTATTATTCTTCCACTGGCCATGATGAGACAGCTTGGGTATCTGGgctacaccagtggtttctcaCTGACATGCATGGTTTTCTTCCTCATCGCAGTCATCTATAAGAAGTTCAACATCCCTTGTCCTCTGGAGGATTTCAGCAATTACACtacagtcaatatcacaaaagaagaagaatgtgaGGCCAAGTACTTCACTATCAACCAGCAGACGGCCTATACAGTTCCCATTTTGGCCTTTGCATTTGTGTGCCATCCTGAAGTGCTGCCTATCTACACTGAATTGCGCAACCCTACTAAGCGACGCATGCAGGCCATCGCCAATGTATCCATCCTAAGCATGTTTGTAATGTACCTGCTGACCGCAATCTTTGGATACCTCACCTTTTATGGAAACACAGAGCCAGAGCTGCTGCACACCTACAGTAAAGTGGACCCACTGGACATACTGAtcctgtgtgtgagagtggctGTACTGGTAGCTGTCACACTGACTGTTCCTGTGGTGCTCTTCCCGATTCGGCGAGCTCTACTGCAGCTGATTTTCCCAGAGAAACCTTTTCACTGGGCTCGTCACATATCCATTGCTGTGGGCCTCCTCTTTGCTGTCAACTTGCTTGTCATCTTTGTACCCAACATCCGAGACATCTTTGGCATCATCGGTGCCACCTCTGCACCAAGCCTGATCTTCATCCTGCCGGGTCTATTCTATATCCGCATTGTCCCAGTAGATCAGGAGCCATTGCACTCAAGAGCAAAAATTCAGGCTATTTGCTTCACAGCCCTGGGTTTCATCTTCATGTCTATGAGTTTAACTTTCATAGCCCTGGACTGGATCAGTGGAGAGAACCGCAGTGGTGGGGGACACTAATTCCCAACCACAAACACAAGGGGTCCAGTATGCTCAGCAGAACACCATCGAGTTGTCCTCTTCTCTCAAACCCAGTTTtggaaacagagagaagagcataaacaaacaaacaaacaaacaaaaaatcactGATAGGCTGGGCCCATCTCGTCTCTGGTCCCTTCCCTCACTGAGTGAGGGTAGGACCTGCTTCCCACCATATTTCAAATTAAATAGAGGAGTGTTTGTGGTGGAGGATCTTGGCCGAACATGATGACATCACGCCCTTCCGAGGCAGTAACATTCAAGATCCTGAATGCAGTAATTTGCTTTGACAATCCACAGAGATAAATGACAATTAGGTTTCTGATTGCAACTGCTTACAGATGCGAAATTCTAAAAGTTCTTTTGCAGCATCTGTAAGAGAACCCAAAAAAGCAGATGTGATGGTTTATTTTGTCCCCTCAATGTAAACAGGAAAAATCCATGTTTTGTACTGCAATCCAAAACCTGATTGATTCTGTTCAATCTTGGTTTAAAGGCAAATAGATTTATGCCATGCACATATAGCAGATTATTTCATTATGTTGATCTGCTACACTTCACTTTTAGGAGAAAACCTTATCCAAGTTTCCAAAGCCCGGTTTTGGTAAAGGGTGAAGTTTTTACACTAAGTCACAAACCGTAATACCTGAATGTTGAAATTggcaaaagcataaaaaaaaatacatattgctATGTTAAAGCCACTTATAAGCCATTTATAAATCAGTGGTTTATAAAGACAGTTCTATTAACAGGAAATGTATAGCATAGCTATTCTTATTATATAACttctttacagtatttaatgtgcCAAGTACAACTGGCATTACCTCAAACAATGAAActgaaataacaaacaaacaaacaaacaaacaaaaacatcatgtgCCTTCAAAACTCAGGGTATACACCTTGATCcctgaatctttttttattcaatgcTGGGCCTCAGATTGTTGCTCTCAAGTCCCTGACTGTGGTTTTAAAGCAGAATAGACAAATTAGAAAGTATACTGATTAGTTTTAATCTTTTCAAAATAGCTTTTTGTTTATGCATGATTAAACTTCATCTGAATAACAAAGGTACAGCAGATTAGAACCTCTGTAATGGAACTCAATGCTGAACTAATAGCTTCAGAGGAAAATCATTCTGTCAGTAGAATTAGAGCAAAAGCtccatctgtattttttttccacaatgaATGAGTGAAGCTTGATAATTGAGAGCTCATTATGTGCCATCGGCTATCATGTATTTATTAGCACTTCTACTGTGGCCTTTTGTTTTAGgttgatttacttttttttttttttttttggtgccaCAGATAAAATCTCCACAAATTTCCAATGTCAAATAATAAGAAGGAAACCAAAAAGAGacattttttaatcacttaATTTTAAGCCAATATGAAAGTGCTGAACAGGCTGAATTaagttttaaattgtttttcctCTGAGTCTAGAGGTTACTGTGAAACAGTGTCTGTGAAATATGTTTTCAAAAGCAGACTAATATCCATGTCCCACATATATCCACATATACACAGgagaaaatctaaaatattcACGGTTAAGATGAGACTAATCTGCCTATTTAATGGATACAAGGTCCTCAAATAAAGGGTAATATTTAGGGAATATTTGCCATTTATTAATGACCTCTTGGACACCTCACTTGGCATTTTTAGCCAACAAAACATCATCCCAATATCTCCTACAATCAGCACATCCTATTCCTCATTCAGTAATAAAGTGGGTCAGACTATTTCATACTCAGTTTACAGTGTAGCTGAGGCACATTGGACAAAGCTGGTGTGGTTGTTGGCTGTTAGCTGTGCATGCCAATGTCACTGTGAACTTCACAATTTACAACCTGTGAATTTGACTATTTTACATTTAGCTTAAAGATGCAGTCTAACTTGATCTGTtagtttttacattattttgcGTGGAATGAAATTCCTCGTACATTCATGTAACACAAACCGGTTTCTTGTTTTATCCCCCAAATCTGAACTGTTGCTGAGTGCATACTACTATTCATGTACAGTAGTGTTGTTCTTCATGTTCTTTCAACAGTTTTGCATCTTCTCTGCTAGTTTAAAGAAGACGGTGCTAATGTTTGATGAAGTGACACAGAATTTTAAAAGGATATCCAGTAACACCAAAGATACTTTGCCGCTGATGAAGTTATTTCAtcaactgttttttgttttttgtttactgaattGGCTGTTGTCTTGGTCATTCTTACAGTTTCCAATAAAGATGAATTCTGTatgatatgaa
>XM_034306692.1
CACACATGTGCTTTCTCCCCCTGCTCACTTGCTCCCTTCACTGGATCTCTAGTGTCCTCTTTACTTTTGGCTCTTCTTTTGGTTTCTTCTCAATTAGAGTGACAACAAACTTTTCAACCAAGAAACCTTCACAGATTATGCTTTTCCATTTCTACATTTGAGAAAACCTCAACTGCAACTtcaaaaggtaaaaaaaaaaaAGATCAACACTAGgcattttttttcagaccaGCTTTACTAAGACTTATTTCACTTCTCTGTAATAATACACTAAAAGATACAAAGATGGAACTTCAGAAACTATCAAATGGACACCACCAGGAATTCCAGCCTCTGGAAGATGGTTTCTCACCAGAGCAAGAACAGTTTTTACCACATAAGAACAACGGGAAAAAACCCCCTCAGTTTACAGATTTTGAAGGGAAGACCTCATTTGGAATGTCTGTGTTTAACCTCAGCAATGCCATCATGGGCAGTGGAATCCTGGGACTGTCATATGCCATGTCCAACACTGGCATAATTATGTTCCTGTTCCTGTTGATGTGTATTGCTATTCTTTCATCTTATTCTATCCATCTTCTTCTGAAGAGTGCTGGAGTTGTTGGTATTCGTGCCTATGAGCAGCTTGGCAAGAGAGCATTCGGTCACCTGGGAAAAATACTGGCAGCTATTGTCATAACAATGCACAACATTGGAGcaaTGTCTAGCTATCTCTTCATTGTGAAATATGAGTTACCTTTGGTCATTCAAGCATTTTTGGGTCTTCATCATAGCAACGGACAGTGGTACTTGAATGGCAACTATTTGATCATCATTGTGTCTATCTGTATTATTCTTCCACTGGCCATGATGAGACAGCTTGGGTATCTGGgctacaccagtggtttctcaCTGACATGCATGGTTTTCTTCCTCATCGCAGTCATCTATAAGAAGTTCAACATCCCTTGTCCTCTGGAGGATTTCAGCAATTACACtacagtcaatatcacaaaagaagaagaatgtgaGGCCAAGTACTTCACTATCAACCAGCAGACGGCCTATACAGTTCCCATTTTGGCCTTTGCATTTGTGTGCCATCCTGAAGTGCTGCCTATCTACACTGAATTGCGCAACCCTACTAAGCGACGCATGCAGGCCATCGCCAATGTATCCATCCTAAGCATGTTTGTAATGTACCTGCTGACCGCAATCTTTGGATACCTCACCTTTTATGGAAACACAGAGCCAGAGCTGCTGCACACCTACAGTAAAGTGGACCCACTGGACATACTGAtcctgtgtgtgagagtggctGTACTGGTAGCTGTCACACTGACTGTTCCTGTGGTGCTCTTCCCGATTCGGCGAGCTCTACTGCAGCTGATTTTCCCAGAGAAACCTTTTCACTGGGCTCGTCACATATCCATTGCTGTGGGCCTCCTCTTTGCTGTCAACTTGCTTGTCATCTTTGTACCCAACATCCGAGACATCTTTGGCATCATCGGTGCCACCTCTGCACCAAGCCTGATCTTCATCCTGCCGGGTCTATTCTATATCCGCATTGTCCCAGTAGATCAGGAGCCATTGCACTCAAGAGCAAAAATTCAGGCTATTTGCTTCACAGCCCTGGGTTTCATCTTCATGTCTATGAGTTTAACTTTCATAGCCCTGGACTGGATCAGTGGAGAGAACCGCAGTGGTGGGGGACACTAATTCCCAACCACAAACACAAGGGGTCCAGTATGCTCAGCAGAACACCATCGAGTTGTCCTCTTCTCTCAAACCCAGTTTtggaaacagagagaagagcataaacaaacaaacaaacaaacaaaaaatcactGATAGGCTGGGCCCATCTCGTCTCTGGTCCCTTCCCTCACTGAGTGAGGGTAGGACCTGCTTCCCACCATATTTCAAATTAAATAGAGGAGTGTTTGTGGTGGAGGATCTTGGCCGAACATGATGACATCACGCCCTTCCGAGGCAGTAACATTCAAGATCCTGAATGCAGTAATTTGCTTTGACAATCCACAGAGATAAATGACAATTAGGTTTCTGATTGCAACTGCTTACAGATGCGAAATTCTAAAAGTTCTTTTGCAGCATCTGTAAGAGAACCCAAAAAAGCAGATGTGATGGTTTATTTTGTCCCCTCAATGTAAACAGGAAAAATCCATGTTTTGTACTGCAATCCAAAACCTGATTGATTCTGTTCAATCTTGGTTTAAAGGCAAATAGATTTATGCCATGCACATATAGCAGATTATTTCATTATGTTGATCTGCTACACTTCACTTTTAGGAGAAAACCTTATCCAAGTTTCCAAAGCCCGGTTTTGGTAAAGGGTGAAGTTTTTACACTAAGTCACAAACCGTAATACCTGAATGTTGAAATTggcaaaagcataaaaaaaaatacatattgctATGTTAAAGCCACTTATAAGCCATTTATAAATCAGTGGTTTATAAAGACAGTTCTATTAACAGGAAATGTATAGCATAGCTATTCTTATTATATAACttctttacagtatttaatgtgcCAAGTACAACTGGCATTACCTCAAACAATGAAActgaaataacaaacaaacaaacaaacaaacaaaaacatcatgtgCCTTCAAAACTCAGGGTATACACCTTGATCcctgaatctttttttattcaatgcTGGGCCTCAGATTGTTGCTCTCAAGTCCCTGACTGTGGTTTTAAAGCAGAATAGACAAATTAGAAAGTATACTGATTAGTTTTAATCTTTTCAAAATAGCTTTTTGTTTATGCATGATTAAACTTCATCTGAATAACAAAGGTACAGCAGATTAGAACCTCTGTAATGGAACTCAATGCTGAACTAATAGCTTCAGAGGAAAATCATTCTGTCAGTAGAATTAGAGCAAAAGCtccatctgtattttttttccacaatgaATGAGTGAAGCTTGATAATTGAGAGCTCATTATGTGCCATCGGCTATCATGTATTTATTAGCACTTCTACTGTGGCCTTTTGTTTTAGgttgatttacttttttttttttttttttggtgccaCAGATAAAATCTCCACAAATTTCCAATGTCAAATAATAAGAAGGAAACCAAAAAGAGacattttttaatcacttaATTTTAAGCCAATATGAAAGTGCTGAACAGGCTGAATTaagttttaaattgtttttcctCTGAGTCTAGAGGTTACTGTGAAACAGTGTCTGTGAAATATGTTTTCAAAAGCAGACTAATATCCATGTCCCACATATATCCACATATACACAGgagaaaatctaaaatattcACGGTTAAGATGAGACTAATCTGCCTATTTAATGGATACAAGGTCCTCAAATAAAGGGTAATATTTAGGGAATATTTGCCATTTATTAATGACCTCTTGGACACCTCACTTGGCATTTTTAGCCAACAAAACATCATCCCAATATCTCCTACAATCAGCACATCCTATTCCTCATTCAGTAATAAAGTGGGTCAGACTATTTCATACTCAGTTTACAGTGTAGCTGAGGCACATTGGACAAAGCTGGTGTGGTTGTTGGCTGTTAGCTGTGCATGCCAATGTCACTGTGAACTTCACAATTTACAACCTGTGAATTTGACTATTTTACATTTAGCTTAAAGATGCAGTCTAACTTGATCTGTtagtttttacattattttgcGTGGAATGAAATTCCTCGTACATTCATGTAACACAAACCGGTTTCTTGTTTTATCCCCCAAATCTGAACTGTTGCTGAGTGCATACTACTATTCATGTACAGTAGTGTTGTTCTTCATGTTCTTTCAACAGTTTTGCATCTTCTCTGCTAGTTTAAAGAAGACGGTGCTAATGTTTGATGAAGTGACACAGAATTTTAAAAGGATATCCAGTAACACCAAAGATACTTTGCCGCTGATGAAGTTATTTCAtcaactgttttttgttttttgtttactgaattGGCTGTTGTCTTGGTCATTCTTACAGTTTCCAATAAAGATGAATTCTGTatgatatgaa

Function

symbol description
slc38a5b Predicted to enable L-glutamine transmembrane transporter activity and glycine transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including alar plate midbrain region; margin; pleuroperitoneal region; segmental plate; and tail bud. Orthologous to human SLC38A5 (solute carrier family 38 member 5).
slc38a5 Enables amino acid transmembrane transporter activity. Involved in amino acid transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: sodium-coupled neutral amino acid transporter 5

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917085.2 False 4002 mRNA 0.39 16 13113706 13134629
XM_034306692.1 True 4017 mRNA 0.39 16 13113706 13134629

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_25 NA coding upstream 49584 13064050 ~ 13064122 (+)
trnav-cac_9 NA coding upstream 51698 13061936 ~ 13062008 (+)
LOC113534124 NA coding upstream 52268 13055450 ~ 13061438 (+)
inavaa LOC108264883 coding upstream 118927 12985427 ~ 12994779 (+)
c8h1orf194 c5h1orf194 coding upstream 134340 12978027 ~ 12979366 (+)
wasb was coding downstream 2060 13136689 ~ 13145207 (+)
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding downstream 79837 13214466 ~ 13225319 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding downstream 175261 13309890 ~ 13352603 (+)
trnae-cuc_18 NA coding downstream 234919 13369548 ~ 13369619 (+)
tpd52l2a tpd52l2 coding downstream 237863 13372492 ~ 13386385 (+)
G131715 LOC108265908,LOC108442391 non-coding upstream 89860 13022216 ~ 13023846 (+)
G131721 NA non-coding upstream 107616 13003395 ~ 13006090 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding upstream 172250 12937304 ~ 12941456 (+)
LOC117597782 NA non-coding upstream 303968 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 384184 12712625 ~ 12729522 (+)
G131930 NA non-coding downstream 139506 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 180814 13315443 ~ 13315663 (+)
G131956 NA non-coding downstream 182669 13317298 ~ 13317506 (+)
G131962 NA non-coding downstream 190875 13325504 ~ 13325713 (+)
G131968 NA non-coding downstream 231251 13365880 ~ 13368176 (+)
rbm15 rbm15,LOC107731203 other upstream 509001 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 883705 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1117854 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1399674 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1416915 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 570537 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 755775 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 815308 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1187543 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1805672 14940301 ~ 14982884 (+)

Expression


Co-expression Network