tspy (LOC108265788)


Basic Information

Item Value
gene id tspy
gene name LOC108265788
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11996043 ~ 12000770 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919551.2
TCTCGTTCGTATCAACATTTGGCTTCAGCCAAATGGCGAACGGAAGGACAAATTATAAACAAGTACGCGGAACTGGAAAACACGAGGCCTTGTTACATATTTAAGTAAGAGAATTTTACGCTTTCTTGCAGACGTAAACAGCAGTAGCGTCAGTGCAGGGAAGCAAACACTGTTTATAGTTAGCATACAAGCGAGCTAGGCCTCTAAACTCTAGGTATCTGGACAGAGGAGAAGTGCTATGCAAACgggttagctagctatctagctagttGGCTAACCTAGCTAATCAGTAAGATCACACATATCAGGGGAAAATCAGATCAGTAAGTTACCAAGCaataattttaaacacactaacaagTGTTTGCTGCTAACTATAACATGAATACAGCGTCGGACAGCAGTAATAAGCCGTCCGAATGTAACAGAAAGAGGAGCGCGAGCCCGCGGCAGCAGGAGGACTCCCCGCTGTCCAAACAGCTCAAAGTGGACGAGGAGGAAGCTGCAGAGAGCGATTCGCGTGAACGCGCCGAGAACGACGCGCTTCCATTAAAGCACAAAAATGGCGCATGTGAGAGTAGCAATGCTCCTGAGCTCTCTGAAAACAGAGTGCAAAATGCAAACGGGACAGAAAACGCCAGTGGGACTGAACggaaggatggagatggagagtcGTCTGAAGGCCAGAAGGCGCGCTCAGATTGCGCAACGATAGACGCAGCTGAAGCTCTCGCGAGCCTCACCGGTGCCGGGGACCAGCGTGCTGAAACGCCTTGTTCATCCAAACAAGCCCTCGGTGAAAACACGGTCAGTAAACAGAGCCGTGcagagctggagctggagctgagcACGCGAGCGGAGGACAGCTGCTCGGTATCCGCGCTGAGAGGTGTCGGTGGAGAGGCGCGGGTGCGCGCGCGCCGCgcagatgaggaagaggaggaggaggaggaggatgatgactCCCTCCCCGGGTCCTCCTTGACAGCCAGCTCGTCTGAtgacgacgacgatgatgatgatgatgatcaggaGCGCGAGGAGTGCGCCATCGTATCGGTGCAGATGGCCCCCGAGCTGCGGCGCTCCGTCGCGCTCCTGGCGCACGTGCAGATGCGGCTGGACGCACTGGAGAAGAAGGGCGCGCGCCTGCACCGGCGCCTCGAGCTCAGGCTGGGCCGTCAGCGGCGTCCTCACCTCGAGCAGCGCGCCGCCATCGCGCAGAGCATCCCGGGCTTCTGGCTCACCGCCCTTCTCAACCACCCACACTTGTCAGCACAGATCGATGAAAATGATGAAGATGCTCTCAGCTACATGATCAATTTGGAGATCGAGActttcaaaaacaacaaactTGGCTACCGGATTTGCTTTCATTTCCGTCGGAACCCCTTCTTTCAGAACAAAGTCATAGTAAAAGAGCTCCATCTTGGATTGGGAGGATCTCCAGTTTCTTTCTCAAACCCAATTGTTTGGCATCATGGACAGTCCTTGACAAGAAATGGAGAACCAAGGCGGAATTCACGCGGAGTTTACGAGAGTTTCTTCCACTGGTTCGATGACCATAGTAGTCCTGGGATGGATGAAATAGCACAGATCCTGAAGGATGACCTGTACAAAGACCCTCTTAGGTACTACCTGACACCATTGTGGGAGCCACGGGAAAATGGCAGCACATCCAAACCACCCCAGAACAGTAAtggagatgagtgtgtgatcatCTCGGATTCAGATGATGACCAGGAACTGGTCAGCCACGATCGACAACAAGAACAGGAAGATCAGGATGATGAGGACAATGAAGATGAAGGTCGAGTCACAGGTGCTGGTGACAGTGACCAAGAAGGAGTGGAATCTTCCACTGAGGAGAGGCAAGAAGAGGAAGTAGATATAGAGGAAGTGGATGAGGTCTGTCACTCAGCTAGCAGTGAGGTCAGAGAGCTGGgccaggaagaggaagaaggagatATTGAGGTtaatgaggatgaggaggaagaggaaaactAGCAACAGTATGCAGATAAAGATTAGAGTTATTCTTCAAGCAAATTATGGACTCATTAGGGCATTGTTATTGCAAGTAGCTGTGTCATGTCTGATAAGTACAGTATCTTGTCAGCTTTTAAAGAAACAGCAAAAATTGCTGGCTGTAATGCAAGATGACGTCATTAATATTTCGCTACAAAATACAGGATGTAGATAAAAAACTGGAAGGTTTAATATGAGATATGTTACATGGCAGTATAATTCATGTGTACAGGCTTTGTGTTCCCATTCCTAATCCAGactaacttttttattttcacatttttattccaAGCAACAGTAGAGGTTTTAACAGTGGTTACTGTTAAAATgcgtaattgttttttttaattgcatggACTATTTTCAGCTAGACAGACAACTACTATAACTCAGTGACGGCGCCCAGTTAAAACGTTCCTGTTGGCCCACAGcattgtttctgtttgtttgttttttttatgatgtgcTTCTGCAGCAGAGCCAGAAGTCTGgcttgctatttaaaaaaaagaaaaagaaaaaaaagagaacagaatCAGTTTTCTGCTATGCATAAGGATTTATATGACCAATACCACATAATCAAAACCCTTTAACCAGATTTGTTGGTTGTGagtttgatattttttaaaactttgtggTAATCATTCTTAAAGGGTGTGTTCTAAATAAATTTGAACTAGATGTACTTAGTTCTGAACCAAAACTGGACCACTCAGGGATGTTTATTACAGTGGATTTGTTTctttgatgtgtttttattggGTATAATAAGATTTATTACTTTGGTCTGAGTTGTTAATAGTTTAAATTTTTAGGTAAATTCCTTAAAATAATTATAGattgatatcttttttttttttttgtaagaataAG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: testis-specific Y-encoded-like protein 1

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919551.2 True 2904 mRNA 0.46 7 11996043 12000770

Neighbor

gene id symbol gene type direction distance location
suv39h1b suv39h1,suv39h1b,LOC108265881,LOC108442234,LOC107550505,LOC107679310,LOC107591797 coding upstream 38640 11947451 ~ 11957403 (+)
taf10 taf10,LOC106572212,LOC107679390,LOC107711978,LOC107591795,LOC107550511,LOC107707678 coding upstream 86039 11906748 ~ 11910004 (+)
efhd2 efhd2,LOC107711975,LOC107591793 coding upstream 91786 11882246 ~ 11904257 (+)
LOC113530451 LOC108266054 coding upstream 119955 11861457 ~ 11876088 (+)
fhad1 LOC108266054 coding upstream 134163 11858468 ~ 11861880 (+)
sema3ga sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661 coding downstream 9303 12010073 ~ 12033492 (+)
stk38a stk38,LOC108265501 coding downstream 75741 12076511 ~ 12096739 (+)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458 coding downstream 102450 12103220 ~ 12187629 (+)
atp5pb atp5f1,LOC107668113,LOC107679218,LOC107711984,LOC107731279 coding downstream 248739 12249509 ~ 12257259 (+)
eps8l3b LOC108265744 coding downstream 256806 12257576 ~ 12274064 (+)
G131061 NA non-coding upstream 278158 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 444012 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 636663 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 1047697 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 1079418 10916337 ~ 10916625 (+)
G131279 NA non-coding downstream 216234 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 225382 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 519124 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 689397 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 699942 12700712 ~ 12701501 (+)
foxp3a LOC108265789 other upstream 191 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 282011 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 299252 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 362199 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 1121917 10870119 ~ 10874126 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 195823 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 598928 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1704396 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1889634 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1949167 13949937 ~ 14022687 (+)

Expression


Co-expression Network