seta (seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061)


Basic Information

Item Value
gene id seta
gene name seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17349316 ~ 17352590 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925931.2
CGCGAGGGCGCGCTCTCTCCGAAAGAGAAACGCGTGAGTGTAGTCGATGTGCTACTAGTACAACTGGGAGCGCGCGTGCGCGTGTATTTGCGTTTCCTCGCAGTAAGTTGAGGAGCGCGACATATTTCAGTGCAAAGGAAGGTTGCTTACCTTTACGAAGTCTAGATAAATAGTCGGTAATTTTCCGtgaaagtagtttttttttttttgctaagcaGTGAAAACATGTCTGCCCCAGCAGCTAAAGTGAGTAAAAAGGAGCAGAACTCGCACCACGATGGAGCGGACGAGACCTCTGAAAAAGAGCAACAGGAAGCTATTGAGCATATTGATGAAGTCCAGAATGAAATTGACAGACTGAATGAACAGGCCAGTGAGGAAATCCTCAAAGTCGAGCAAAAATACAACAAGCTTCGCCAGCCATTCTTTCAGAAGAGGTCAGAACTCATTGCCAAAATTCCCAACTTTTGGGTCACTACATTCGTGAATCACCCGCAAGTCTCTGCTCTCCTTGGTGAGGAGGATGAAGAAGCACTTCACTATCTGACAAGGGTGGAAGTAACAGAATTTGAAGACATCAAATCAGGCTACAGAATAGATTTTTACTTTGATGAAAACATGTATTTCGAAAACAAAGTCCTATCCAAAGAAATTCATCTGAATGAAAGTGGAGACCCAACTCCAAAGTCCACAGAGATCAAATGGAAACCAGGAAAGGACCTCACAAATCGTTCCAGTCAAACTCAAAGTAAAGCGGGCAAGAAGAGGCAACATGAAGAGCCTGAGAGCTTTTTCACCTGGTTCACTGATCACTCTGATTCAGGAGCAGATGAGTTGGGAGAGGTCATAAAAGATGACATCTGGCCCAATCCTCTGCAGTATTACCTGGTCCCAGATATGGAAGATGAGGAAGGAGAGggtgaggatgaagatgaagaaggtCTAGAAGACATAGATGAAGAGGGAGAAGATGGAGAAGAGGATGATGGGGAGGATGATGATGGAGAGGATGACTGAAAAGTAAGAAAGTTGAGTATAATCCATCACTGCTTGGTCCTGTCTGCCACAACCCATCTGCTTCTTTGGTGATTCTTGGGAGCAAAAATgcatccttttttcccccttttttccttcctgtcttgttttttttgtgctccATCTCCTGTCCTGACAGTGCCATGTTGAAATCCACCCAGGAAGAGACTTAATAAACTGACTGGAAAATACTGCCACTATGGCAATTAATATCTCAATTCCCAAGTACATTTTGAGGATTAAAACAAAAGGcaaaacacactgtaatataaGCAGCACACTGTCTGGAGTAGACTTGCGAATAGggtaaactttttatataaatatataaatgtatatgcaTATTTCATCCTGTTAGTGTGGTTAAAGGAACAAAGGccatggtgtgtgatgtgtatttcCAGCATCCTTCTTAACAGCTTTGTTGCTCATGGCGTTACAACTGCTTAGTGATCTTGAGTTTTCCCCTCTAGCTTGTGGTTACAAGAATATAAATAACAACCTTACTCCTCTCCC

Function

symbol description
seta Predicted to enable chromatin binding activity and histone binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be active in chromatin and nucleus. Is expressed in central nervous system; optic cup; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to several human genes including SET (SET nuclear proto-oncogene).

NR:

description
PREDICTED: protein SET

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11290 SET, TAF1, I2PP2A; template-activating factor I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925931.2 True 1551 mRNA 0.43 8 17349316 17352590

Neighbor

gene id symbol gene type direction distance location
LOC117597835 NA coding upstream 267366 17061058 ~ 17081950 (+)
LOC113524948 NA coding upstream 299036 17037821 ~ 17050280 (+)
cux2b cux2 coding upstream 770627 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 910232 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 951691 16376145 ~ 16397625 (+)
crb2b LOC108264959 coding downstream 58518 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 258796 17611386 ~ 17621646 (+)
enkd1 NA coding downstream 553214 17905804 ~ 17916639 (+)
polb polb coding downstream 575834 17928424 ~ 17939695 (+)
plat plat coding downstream 735351 18087941 ~ 18118075 (+)
LOC117597810 NA non-coding upstream 18653 17312899 ~ 17330663 (+)
G134303 NA non-coding upstream 115892 17233175 ~ 17233424 (+)
G134301 NA non-coding upstream 138130 17210952 ~ 17211186 (+)
G134245 NA non-coding upstream 329420 17019679 ~ 17019896 (+)
G134242 NA non-coding upstream 332782 17016254 ~ 17016534 (+)
LOC117597877 NA non-coding downstream 23713 17376303 ~ 17378236 (+)
LOC117597787 NA non-coding downstream 33674 17386264 ~ 17398372 (+)
G134466 NA non-coding downstream 258263 17610853 ~ 17611055 (+)
LOC113533142 NA non-coding downstream 346813 17699403 ~ 17714824 (+)
G134516 NA non-coding downstream 383797 17736387 ~ 17736771 (+)
G134341 NA other upstream 52433 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 480548 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 611332 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 727550 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 929807 16402748 ~ 16419509 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 678385 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1083595 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2134897 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2473208 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2828178 20180768 ~ 20185618 (+)

Expression


Co-expression Network