slc5a9 (slc5a9,LOC107757988)


Basic Information

Item Value
gene id slc5a9
gene name slc5a9,LOC107757988
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10875410 ~ 10883004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927752.2
ATGACATCTGCACCTGAGCTGGTGACAGGCACAGCCGAGCCGGGACAGAATGGGAAGTTTACACTGGAGATCGCTGATATTGTGGTTGTGGTGGTCTACTTCATATTCGTGCTAGCAGTGGGAATATGGTCATCCGTCAGAGCCAATAAGGGAACCATTGGAGGATACTTCTTAGCTGGGAGATCCATGACATGGTGGCCAATTGGAGCTTCTTTGATGTCCAGTAATGTTGGCAGTGGCTTGTTCATTGGATTAGCAGGCACTGGGGCAGCAGGGGGACTCGCTGTGGGGGGATTTGAGTGGAATGCAGCATGGGTCCTCATTGCTTTGGGCTGGATCTTTGTGCCTGTGTACATTTCTGCTGGAGTTGTCACCATGCCCGAATATCTCAGGAAGAGGTTTGGAGGCCAGCGCATTCGGATCTACATGAGtgttctttctctcattctctacATCTTCACCAAAATATCAACAGACATTTTCTCTGGAGCGCTGTTCATTCAGGTGTCACTGGGATGGGACCTGTACCTCTCCACTGTAGTGCTGCTTGCAGTCACAGCACTCTATACTATTGCTGGTGGATTGACTGCAGTGATTTACACTGATGCTCTGCAGACTGTCATTATGGTAGTTGGAGCACTTGTCCTAATGTTCATAGCATTTAATAAGGTGGGCTGGTACGAGGGCTTGCTGGAGCAGTATGAGAAAGCTGTGCCTGCTCTCACTGTTCCTAACACCACGTGTCACCTCCCTCGCCCTGACGCCTTCCACGTCTTCCGGGACCCGGTCAGTGGTGATCTGCCGTGGCCTGGCCTGCTCTTCGGGCTCACCGTGCTGGCTACATGGGTGTGGTGCACTGACCAGGTGATAGTGCAGAGGTCCCTCTCTGCTAAAAACCTGTCACATGCTAAAGGAGGCTCGGTGCTGGGTGGCTACCTGAAGATCCTCCCCATGTTCTTCATCGTCATGCCAGGAATGATCAGCAGAGCACTCTACCCAGATGAAGTGGGATGTGTGGATCCTGATGAGTGCCTTAAGATATGTGGAGCTACTGTGGGCTGTTCTAACATCGCCTATCCTAAACTGGTGATTGAGTTAATGCCAGTAGGTATGCGAGGCCTGATGATCGCAGTGATGATGGCAGCTCTCATGTCCTCGCTCACCTCTATATTTAACAGCAGTAGCACCCTCTTCACTATGGACATTTGGCTGCGCATGAGACGGCAGGCATCTGAGAGGGAGCTCATGGTTGTGGGAAGggtattcattttattcttgGTGGTCGTGAGCATCTTATGGATTCCAATCATTCAGTCAGCCAACAGTGGGCAGCTGTTCGACTACATTCAGTCTATAACCAGTTACTTGGCCCCTCCGATCACTGCCGTCTTCCTGATGGCCATCTTCTGGAGTCGCGTGAATGAACAAGGGGCGTTCTGGGGGCTGATGGCAGGTTTGGTGGTTGGCCTTGTACGCATGGTGATGGAGTTTGTCTATGCTGCTCCTTCCTGTGGAGAGGAGGACCTGAGACCCCCCATGCTGAAAGATGTGCACTACCTGTACTTTGCTCTTATACTGCTCGCACTGACAGTGCTGGTCATTACTGCAGTCAGCCTCTGTACTTCTCCTATTCCAGAGCAACATCTTATCCGTCTAACCTGGTGGACAAGACACAGCAAGAAGGAGCGTGTAGATCTGGAGGACCTGTGGGCAACCTCACCCACATCAGCACACTCTCAACCTGCTTCTGATCCGGAGCTGAGGGTAGAAAGGCCTGCGTGGTGGAGACGAGTGGGAATGTGGCTGTGTGGACTGTCTGAAGCTCCTAAACCGGAGCTAAGCAGAGAGGAACAGCTGGCTATGGAGAAAAAGCTGACTAGCATTGAAGAGGAACCCATCTGGAAAAATGTTTGCAATATCAATGCCATCATTCTACTTACTGTCAATGTATTTCTTTGGGGCTACTTTGCATAAGAAGAGCAGACTCTGtcatatttcatgttatttAGAGAGTTCTTCAGGCATGACATTCATCTCAAAAGGCTAAAACTGAGTACCAAATAACTTGAATGTGAAAGTACTGTACATATGAATAAAACAATCCAATTCTTTAGAGGACCCTTAAATGAAAAGCCACACAATCTACACaagtaacaaacaaacaaataagtgtTCAAATTAGGTGTAAATTCAACTCAATACAGTTCAACTGTATTTATATagtagtgcttttaacaatggacaatgacccaaagcagttttacagaaatccggatatagACTGATTGTTTAGACTGATCCAGATGTAAATGATTGTTTAATGCTTAATACACAATAATGGCCAAACTATAAGATTACATATAATGGTGAAGTTAATGTGTTGAGAAAATGTGCTAAAATCCTCAGCTAAGGTCGCTTAAACtctcttttgatttttatttaaagattttctgTTTTACATATAAGTTTAAACATGGTAATGATTCATttactatatgtaaatatttactcTATAAATATCTCACATTTCACATGTTTCTTGTGCAgtaaatatcttaaaaaaaaaaaaccctaaagtcattcaattatttaaaatggtttaatgGTTTACAATGTACAATTTAATTCTTAGAATATCAGACCTGACCATGTACACAATGGAGgtgttttaataaagtttttaataGTTTGG

Function

symbol description
slc5a9 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A9 (solute carrier family 5 member 9).

NR:

description
PREDICTED: sodium/glucose cotransporter 4

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14389 SLC5A9, SGLT4; solute carrier family 5 (sodium/glucose cotransporter), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927752.2 True 2692 mRNA 0.45 13 10875410 10883004

Neighbor

gene id symbol gene type direction distance location
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding upstream 84496 10743725 ~ 10790914 (+)
kazna kazn coding upstream 194141 10631481 ~ 10681269 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding upstream 333638 10513439 ~ 10541772 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding upstream 595476 10168385 ~ 10279934 (+)
mov10b.2 LOC108265909 coding upstream 797889 10056229 ~ 10077521 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding downstream 531 10883535 ~ 10894051 (+)
dnttip2 LOC102796155 coding downstream 12435 10895439 ~ 10902076 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC103028496 coding downstream 336547 11219551 ~ 11288918 (+)
cdkn2c cdkn2c coding downstream 553381 11436385 ~ 11447884 (+)
si:ch211-198n5.11 LOC108265604 coding downstream 705820 11588824 ~ 11596613 (+)
G130492 NA non-coding upstream 12772 10862404 ~ 10862638 (+)
G130459 NA non-coding upstream 112541 10753800 ~ 10762869 (+)
G130412 NA non-coding upstream 326343 10546979 ~ 10549067 (+)
G130415 NA non-coding upstream 350711 10519440 ~ 10524699 (+)
G130285 NA non-coding upstream 728276 10085561 ~ 10147134 (+)
G130608 NA non-coding downstream 25350 10908354 ~ 10908717 (+)
G130609 spata6 non-coding downstream 26889 10909893 ~ 10910207 (+)
G130611 NA non-coding downstream 28160 10911164 ~ 10911375 (+)
G130618 NA non-coding downstream 33333 10916337 ~ 10916625 (+)
LOC113527270 NA non-coding downstream 61653 10944657 ~ 10948346 (+)
mrpl55 mrpl55 other upstream 1284 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 133985 10706719 ~ 10741425 (+)
tmem51a tmem51 other upstream 178579 10683078 ~ 10696831 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other upstream 311849 10543919 ~ 10563561 (+)
G130390 NA other upstream 517095 10357946 ~ 10358315 (+)
LOC113530800 LOC108266038 other downstream 739298 11622302 ~ 11633844 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other downstream 794507 11677511 ~ 11696791 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other downstream 822543 11705547 ~ 11714032 (+)
foxp3a LOC108265789 other downstream 1096182 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 1313589 12196593 ~ 12230001 (+)

Expression


Co-expression Network