igf3 (LOC108265640)


Basic Information

Item Value
gene id igf3
gene name LOC108265640
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1225652 ~ 1234425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928347.2
ACGAAACACAGCGTTTGCAGCCGTCATGACACACACTCGACACGGAGTAACACCTGCGCTACAgGTGCTGTgttggaggagtgtgtgtgtgttgtacacgctgttggtgtgtgtgctgctccCGGAACTTGCTCACTCAGCAAAACCTCGGTGTGGAGTGGAGCTCATCGCTGATCTTCAGTTTGTATGTGGAGATCGAGGATTTtatagaggtcACCCCGGAGCAGTGAGGAGTGCAGGTCCACGGTGCAGAGGTAAAGGAATCGTGGAGCAGTGCTGTGTGAAAGGATGCGACCTGCAGCATCTGGAACATTACTGCGCCAAACCGAAGCGAGAGCGACGTCACGCGCGACACACACCGCCCACGCCGCACACTgagGATCAGTTCTGGCTGATGTTTCTCAGACGATACGAGATGAACCAGTTTGAAAACGAACCGGAGAAATTCTTGGAAAGGCTCAAAGAGCGAACGCTGTACAAGAGGAAGTTCGGAAACGCCTCGCTGCTGCCTGTTATTAGCGGAAAAATCCCTCGATCTCCTCAGCGCTTAAAGCACCGGCGAAAACGGCGTAACTGAAAACAAATCTTTTTCCGTCACTTTTTCAAAGACCTGACCGAgcaaataaacatcacagtCACGATTAGCATcaattagaaataaatattaattaagctCATTTAAATGAGCTCCGTGAATATGAATCGCTACTTATGTTCATTTTCCTTGAATGTGGcctttattttatgtttattcagCTAATGTGTAGCATGTAGCACAGATTTTTTCCAAACGAATGTTAATAGTCAATTACGCTAATGCTAATTGATAAAACTCTATTTGAAATTTATAatttaggtttttattttgcGTTTTATGTTTTTCAACTGCACTCAAGAAAGTAAGCACACAAGCTCGAGCTTTGAATTTATTCCCATGTCATATTACGTTGAGATTTTCGTATCTTAATCGTTTCCTGACAGTATCACAGGATCACGTACATCATCAGCTGTATTGCACTAATTGCACACGATCGCTAGCATCTCAACACAATTAGCtcttatagcaaaaaaaaaaaaaaacaagctaactAACATGGTTAGCTAACTAACGAACTATTGCTAGCTATGAATTTACATGTGTGACATTAGCTatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928347.2 True 1154 mRNA 0.43 4 1225652 1234425

Neighbor

gene id symbol gene type direction distance location
serping1 NA coding downstream 2984 1202728 ~ 1222668 (-)
cabp4 cabp4,LOC108265140,LOC108413084,LOC103025235,LOC107603028 coding downstream 89955 1115082 ~ 1135697 (-)
LOC113535044 LOC108265512 coding downstream 124697 1082098 ~ 1100955 (-)
LOC113535165 b3gnt3 coding downstream 127927 1072745 ~ 1097725 (-)
LOC117597794 NA coding downstream 154273 1067561 ~ 1071379 (-)
si:dkeyp-110g5.4 NA coding upstream 2013 1236438 ~ 1242966 (-)
soat1 soat1 coding upstream 48276 1282701 ~ 1298053 (-)
LOC113535232 cacna1e,LOC108265206,LOC107100995 coding upstream 109883 1344308 ~ 1449724 (-)
tpk2 LOC108265462,LOC108411638,LOC107599057 coding upstream 530463 1764888 ~ 1771467 (-)
ugt5e1 NA coding upstream 579852 1814277 ~ 1817419 (-)
G125005 NA non-coding downstream 47113 1166724 ~ 1178539 (-)
G124863 jak3 non-coding downstream 253913 970318 ~ 971739 (-)
G124854 NA non-coding downstream 262726 901023 ~ 962926 (-)
G124856 NA non-coding downstream 311026 905828 ~ 914626 (-)
G124840 LOC107725316,LOC107599027 non-coding downstream 403994 819404 ~ 821658 (-)
G125850 NA non-coding upstream 324041 1558466 ~ 1601407 (-)
G125868 NA non-coding upstream 420034 1654459 ~ 1654935 (-)
G125875 NA non-coding upstream 443398 1677823 ~ 1718996 (-)
G125882 NA non-coding upstream 457674 1692099 ~ 1793317 (-)
G125885 NA non-coding upstream 466591 1701016 ~ 1721015 (-)
sap30bp sap30bp other downstream 499767 705368 ~ 725885 (-)
itgb4 itgb4 other downstream 528534 663353 ~ 697118 (-)
LOC113525517 LOC108265356 other downstream 709599 498166 ~ 516053 (-)
lrriq3 lrriq3 other downstream 891096 301944 ~ 334556 (-)
G124658 NA other downstream 1209291 14898 ~ 16361 (-)
si:dkey-21p1.3 LOC108265104 other upstream 64554 1298979 ~ 1338978 (-)
acbd6 NA other upstream 357545 1591970 ~ 1623229 (-)
mutyh NA other upstream 768591 2003016 ~ 2017364 (-)
dmap1 dmap1,LOC107750524,LOC107699933,LOC107758267,LOC107548533,LOC107585836,LOC107657923 other upstream 883094 2117519 ~ 2132082 (-)
tmem47 tmem47,LOC107657933,LOC107585845,LOC107717575 other upstream 1072434 2306859 ~ 2332046 (-)

Expression


Co-expression Network