LOC113535232 (cacna1e,LOC108265206,LOC107100995)


Basic Information

Item Value
gene id LOC113535232
gene name cacna1e,LOC108265206,LOC107100995
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1344308 ~ 1449724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306649.1
GCAGAGAATCAGGATCCATGTAGCAGCACATTATTATAGAGTTACGCAGCAGCTACGCTCGTTAGcGTGATGCTGAGAGAGCGGCGCCATGCTGGAAGTCAGCGACATCCTCGCGGTGCCAGCGTTGTGCCAGGACACAGAGAGGTGGCACAAACAGCGGGGGGCGCTGCTCGACCCTCTCTTACCTCACACGGGCAGCTGTGATGCCCTCTGCCCCACACAGGAAGGGGGGCTGGGGGCAATGGGGGGGCAGCCAGGGGTCAACGCCACTCTCTTCACCCGCAGGAGGGGAGGACTTATCGAACAGAGGGACATCGTTAAAGCTCATCAGGCTCACAAGATACAGAGCACGCCACAGGCACGACGCAAAGAATGGGAAATGGCTCGGTTCGGGGACGCGGTGCCGCCGGGCCACGGCGTGCTGGACGGCGGGTCGGAGCGCAGCCGCACTCGGGAGCCTCCTTCATCCTCCACCGGCGGAGTTTCTCCGGTTTTCAAGCAGACCAAAGCGCAGCGCGCGCGCACCATGGCCCTGTACAACCCCATCCCGGTCCGACAGAACTGCTTCACCCAGAACCGCTCGCTCTTCATCTTCAGCGAGGACAACGTGGTGCGGAAGTACGCCAAGAGGATCATAGAGTGGCCGCCGTTCGAGTACATGATCTTAGCCACCATCATCGCAAACTGCATTGTTTTGGCTCTGGAGCAGCATTTACCTGGAGAGGACAAGACGCCTATGTCAAAGAGActgGAGAAAACCGAGCCCTACTTCATCGGGATGTTCTGTTTCGAGGCGGGGATAAAGATCGTGGCTCTGGGATTCGTGTTCCATAAAGGATCGTACCTGAGGAACGGCTGGAACGTCATGGACTTCATCGTGGTGCTCAGCGGgatccTGGCCACTGCAGAAGCTCATATGAACATCCCGGTTGATCTGAGGACGTTACGAGCTGTTCGGGTTCTGCGGCCCCTCAAACTGGTGTCAGGAATTCCAAgtctGCAGATCGTTTTGAAGTCCATCATGAAGGCGATGGTTCCTCTGCTGCAGATCGGcttgttgttattttttgccattttaatgTTCGCCATCATCGGCCTGGAGTTCTACAGCGGCCGCCTACACAAGACCTGCATCCCCGATCCAGATATACAggAGAACGAGACGGTTCCGGATTGGGAGGCGGAGTTTCCGTGTGGAGATCGTCTGTGTCCGTATAAATACAGCTGTAACGGATCGTGGATCGGGCCGAACGACGGAATCACGCAGTTCGACAACATCCTGTTCGCCGTGCTCACCGTGTTCCAGTGTATCACCATGGAGGGCTGGACCACCGTCCTGTACAACgccaACGATGCTTTAGGTCCAACGTGGAACTGGCTGTACTTCATCCCCCTCATCATCATCGGCTCCTTCTTCGTGCTCAACCTGGTGCTGGGAGTTCTGTccggagagtttGCTAAGGAGAGAGAGCGTGTGGAGAACAGGAGAGCTTTTATGAAGCTCAGACGTCAGCAGCAGATCGAAAGAGAACTGAACGGATATCGAGCTTGGATTGACCGAGCAGaggAAGTGATGCTGGCAGAGGAGAATAAGAACTCGGGTCCTTCAGCTCTGGACGTGTTAAAGAGAGCCACCACGATAAAGAGGAGGGGAGTGGACACCATCCGACACGGTCCTGAAGAGCAGTGTGTGGACATCGCTTCTGTCGgtggGCCGATGAACAGGGCGAGTATCCGCAGCGTAAAGCGAGGGCCCGCGGCGTATTTCCGGAGGAAAGAGAGGATGTTGCGTATCTCCGTCCGCCGCATGGTGAAGACACACACCTTCTACTGGACCGTGCTGGGCCTCGTGGCCTTAAACACCATCTGCGTGGCCATCGTTCATCACAACCAGCCCGAGTGGCTCTCCACCTTCCTCtatTACGCAGAGTTTCTGTTCCTGGGTCTGTTTCTGACGGAGATGTTCCTGAAGATGTACGGTCTCGGGCCTCGACTTTACTTCCACTCCTCCTTTAACTGCTTCGACTTTGGAGTGATCGTTGGCAGTATCTTTGAGGTGATCTGGAGTTTCTTCAGACCGGGAATGAGTTTCGGGATCAGCGTCCTGCGTGCGCTCCGACTGCTGAGGATCTTCAAGATCACCAAGTACTGGGCGTCTCTGAGGAACCTGGTCGTGTCGTTGATGAACTCCATGAAGTCCATCATCAGTttgctcttcctcctcttcctcttcatcgTGGTTTTTGCTCTGCTGGGCATGCAGCTGTTCGGCGGAAGgttcATCTTTGAAGAATACACTCCTACTAACTTTGATACATTTCCAGCTGCCATAATGACCGTGTTTCAGATCCTTACAGGAGAGGACTGGAACGAAGTGATGTACAACGGGATTCGCTCTCAGGGAGGAGTGAAGTCGGGAATGTGGTCTTCCATTTACTTCATCGTCCTCACGCTGTTTGGAAACTACACACTTCTCAACGTCTTCTTGGCTATCGCTGTAGACAATTTAGCCAACGCTCAAGAGCTCACCAAGgatgaagaggaggaagaggaagcgtTTAATCAGAAACACGCGCTGCAGAAGGCGAAAGAGGTCGGCCCGATGTCGTCCTTCATTTCCTCAGAGCGGAGGAGACGGCCGTATCTGTACAGGAAGCGCGTGCTGATCCACCGCGGCCGCACGGCTTTCTCTCTGGAGGAGTCGGACAGTTTCAGCGACGCTCCTCCACTCAATCCCTCTCGCTCTTTCATGTCCAGGAGAGAAAGACGCCGGCGTCTGACCATGTCCGTGTGGGAGCAGAGGACCAGCCAGCTCCGGCGCCATCGCCAAACGTCCAGCCGAGAAGTCCTCTACGGCTCGTCCGTGTGCCACCATCGGAAACTCGCGCACTCCACCGAGATCCCGCCCTCGCCGGAGATCAGCTCCGCTCTCGACCCTCTGGAGTCTCTGGAGCCGTCCATGGAGGAGCAGAACGTCTCCATCCCGCTGCCGGATCCTCCCGAATCCGAACAGTCAAACACCAAAGATCTGCACCGGAAcaccgcgcacacacacacagacatcagcaCCACTCTGGAGCTCCTGGATCCTCTAGACCCGGCGAAAGAAGAGCAGAACATGGATAACGCCCAGTTACCCGGAAACGCCTCGGAGGAATTTCAGGATAAAAACCACTTGAGTGTCCGGAGGCCAAACGGAGAGCGGCGGCAACGAGGGACGCGTAAATACAGCaaatacagtaaacacagcaaacacagaaaCTCAGAAACACACCACCAACGGCACGACGAGCCGAACGCACACGAGCGCAGCCGCTCCACCAGCCGAGAACGGAGGACGAGAAACGAAggcgaggaagaggaggaggagaagaagagcaACAACGATGGAGGTGTCGGTCAAGAAGGAAGGACCGCTGAGGACAGAGATCTGGCCTCAGACTCGGAGCCGGCCACGCTCCAGATCACCGACAGCACGACGCTGGAGTCTGTAGTAACCTGTAAGGCCGCTACTGAGggagaaaacaacaacaaccaagACAAAACATCACTCAGCACCAATGTAGTGATTGGAGACATGGACACCGCACCAGGCCTGGAGCTCTCCACCATTACAACAAATAATAAAGATCTGGAGGCCTCAAAATCTGAGAAGGAAGACGAGGAAGCAGCGAATCGTTCGAGAACTCCCCCAGACAGCATGTTCATCTTCAAACCCCACAATCCGATCCGCAGGGCGTGTCATTATGTCGTTAATCTGCGTTATTTTGAAATGTGCATCCTGTTGGTCATCGCTGCGAGCAGTATCGCTCTGGCGGCTGAAGATCCAGTGGCCACAAACTCAGACTGGAATAAAGTGCTGCGTTACTTTGATTATGTGTTCACTGGAGTTTTCACATTTGAAATGATAATTAAGatgatCGAGCAGGGCCTAATCCTTCATGATGGCTCTTATTTCCGTGATCTGTGGAACATTCTGGATTTCATCGTTGTGGTTGGAGCGCTGGTGGCGTTTGCTCTCACGAATGTACTGGGgaATAATAAAGGTAGAGACATTAAAACCATCAAGTCTCTGCGAGTGCTGCGAGTTCTCCGGCCCCTGAAGACCATCAAGCGACTTCCTAAACTAAAGgCGGTGTTTGATTGCGTGGTCACGTCTCTGAAGAACGTCTTTAACATCCTCATCGTCTATAAGCTCTTCATGTTCATCTTCGCCGTCATCGCCGTGCAGCTCTTCAAGGGCAAGTTCTTCTACTGCAGCGACGGCTCCAAGGACACGGAGAAAGACTGTCAgggTTACTACATCGACTACAACAAAGATAAGAAGGAGGTGAAGAAGCGCGAGTGGAAGAGACACGAGTTTCACTACGATAACGTGATCTGGGCGTTACTCACACTCTTCACCGTCTCTACAGGAGAAGGCTGGCCtcaGGTTCTCCAGCACTCGGTGGACGTGACGGATGAGGATCAAGGTCCGAGTCGAGGGAACCGGATGGAGATGTCCATCTTCTACGTCATTTATTTTGTGGTTTTCCCGTTTTTCTTCGTCAACATCTTCGTcgctctcatcatcatcaccttccAGGAGCAAGGAGACAAGATGATGGAGGAGTGCAGCCTGGAGAAGAAcgagagGGCGTGTATCGACTTTGCGATCAGTGCTAAGCCGCTAACACGCTACATGCCGCAGAACCGCCACACGTTCCAGTATCGACTGTGGCACTTCGTGGTGTCGCCTTCGTTTGAGTACACGGTGCTGACCATGATCACACTCAACACCATCGTCCTCATGAtgaagtattaTTCAGCTCCTCCTGTATACGACGCCGTGCTGAAACACCTCAACACTGCGTTCACTGTGCTCTTCTCTGTTGAGTGTGTTCTCAAAATCTTGGCGTTTGGTTTTATgaattaTTTCAGAGACACGTGGAATATATTCGATTTCATCACCGTCCTGGGAAGCATCACGGAAATCGTGGTCGACCAGCAGtcggCTTCCTTTAACATGAGCTTCCTGAAGCTGTTCCGTGCGGCTCGGCTCATAAAGCTGCTCCGGCAGGGATACACCATCCGCATCCTCCTCTGGACCTTCGTCCAGTCCTTCAAGGCTCTGCCGTACGTCTGTCTGCTCATCGCCATGCTCTTCTTCATCTACGCCATTATCGGcatgcagGTTTTTGGGAACATCAAGCTGAACGAGGAAACTCACATCAACCAACACAACAACTTCAAAACCTTCTTCGGTGCCTTGATGTTACTCTTCAGgagtgcgACGGGCGAGTCGTGGCAGGAGATCATGTTGTCGTGTTTAGGAGGTCAGGAGTGTGAAGCCGATCCGTCTCTCATCCCTCCGTCCGAACCTGATGGAGGATGTGGCACTGACTTCGCTTACTTCTACTTCGtctccttcatcttcttcaGCTCCTTCCtgATGTTGAATCTGTTTGTGGCAGTGATTATGGATAACTTTGAGTATTTGACGCGCGACTCCTCGATTCTCGGTCCTCATCACCTGGACGAGTTTGTGAGGATGTGGGGACAATACGACCGAGCAGCCTGCGGCAGGATTCACTATAAGGACATGTACAAAGTAGTGCGCACTATATCGCCCCCTCTGGGCTTTGGGAAGAATTGCCCCTACAGGGTGGCATGCAAGAGGCTGGTGCTGATGAACATGCCAGTGGACGCAGAGATGACGGTTCACTTCACGTCCACTCTGATGGCTCTGATCCGCACCGCACTGGAGATCAAGATCGCACGAGgtggaGAAGACCGTGGACAGATGGACATTGAGCTTCAGAAAGAGATCAGCGTCATTTGGCCGCACCTCTCCCAGAAGACACTGGACCTGCTTGTGCCCATTCataaagCGAGTGACATGACGATCGGGAAAATCTACGCCGCCATGATGATCATGGATTATTACAAACAGAACAAAGCTAAAAAGCTCAGACAGCAGCTGGAGGAACAAaaaCACGCCCCGATGTTCCAGCGCATGGACGCCTCGTCGTTACCGCAGGAAATTCTGTGCAGCGCTAAAGCTCTGCCGTTCCTCACACACAGCGCAGGAAACGCTCTgacgAGAGGCGGGTTCGTGGCGTTGAGTCCCATTTCTCCTCAGGAACTCTTCATGCAGCCAATCACACCAGAgcaagaggaggaggagtacaCACCCCACTACAGACCCCAACACTCCCCCAgcacgGTGAACTCAGAGAAGAAGCTGATGAAGCGCTCGTTCTCCACCATCGGGGATCAGTGTGTGAACGGCGTCTGGCAGGAAGAGTTCTCGCTGGAGAGAGTGAGTCCTGAGCGGCTGGAGAGACCGCGGCAGCGCAGcttcagaggtgtcaGGTCGAACCTCAGAGAGCCGGTGTGTAAGGAGAGAGGACGCTCGAAGGAGAGGAAACACCTGCTGTCACCTGATCCATCACGCTGCAACTCTGAGGAGAGAAACCAACCAAGAACACAcgagacacaacacacacacacacgctcacccAGCGaggggagaacacacacacagGGCGATGCTTCAGAAAGTCCACTTCCCTCCTCCTCAGACTCCAGGGGGCGTCGCCAGCTTCCTCAGACTCCCTCCAGGCCCCGCCCACACATCTCCTATTCGCCTCTGGTGTGCCGCAGCCACCTGACCACAGAGGACAGCCAATCACGGACACAGTCTGCCATAGAGGGGGCGGGGTCTGTGTTAAGCCCCGCCTCCCCACAGCGCTACACCTCGGAGCCATATCTGCCTCTGCACGACGACTCCAACAGTCCAGAGGAGATGCTTACATTTGAGGCTGCCATAGCAACCAGTCGAGGGCGTGGCCATGTCGTAAGCTCCGCCCCTCAGTTGCGTCACACGTGGCAGATGCCTAACGGACATTTCCGAAAAGGCTGCGAGCTCCTCAGTGACACGGACGAGGACGACCGCTGCTAGAGACAGTGGGCTGGAAGTGGGCGGAGCCTTGACACGAGCCAATCACGTCCGGACATTTCTTACTGGAGATTTGTCCGGGACATTTCAGAAGTGCACTGCCAAAAACGTAACAAGGCGGAGACGTCGCTCGTCTGATTTTACCGAAATAACAAGAGTGGAGCttaagttaaattttatttagccAATCGCTAACTTaatcatgtgacatcaccacaGGAGTTTAGCTAATGACCGCTAGTCTGCTAGCAAACGTGTCCACTGGATTAAATTACACGTGCAATTAAACCGTTCACGTAACGTTAGCTAGCGACACCAAGCCGTTACTTAACGGGAgaaatgctaacattagctagctgtgtgaagaaaaacaacatcTAATTAAAATGATCTCACAAGATCATCAGCTATTGGCCGATGAAATGAAGCTTAAGCTCCGCCCTCGTTGACCTAGGGAAGCCTGTCAGAAACAGAACTATGAAAAgatagaaaagaaaggagagaacAGAATGATGAAcaacgaaagaaaaaaaaactgacaaaagaaagtaagaaaaagaaataaaaaa

Function

symbol description
cacna1e Enables voltage-gated calcium channel activity. Predicted to be involved in calcium ion import and chemical synaptic transmission. Predicted to act upstream of or within several processes, including behavioral fear response; regulation of peptide hormone secretion; and visual learning. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated calcium channel complex. Predicted to be active in GABA-ergic synapse. Predicted to be integral component of postsynaptic membrane and integral component of presynaptic membrane. Implicated in developmental and epileptic encephalopathy 69.

NR:

description
PREDICTED: voltage-dependent R-type calcium channel subunit alpha-1E isoform X2

GO: NA

KEGG:

id description
K04852 CACNA1E, CAV2.3; voltage-dependent calcium channel R type alpha-1E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306649.1 True 7509 mRNA 0.53 49 1344308 1449724

Neighbor

gene id symbol gene type direction distance location
soat1 soat1 coding downstream 46255 1282701 ~ 1298053 (-)
si:dkeyp-110g5.4 NA coding downstream 101342 1236438 ~ 1242966 (-)
igf3 LOC108265640 coding downstream 109883 1225652 ~ 1234425 (-)
serping1 NA coding downstream 121640 1202728 ~ 1222668 (-)
cabp4 cabp4,LOC108265140,LOC108413084,LOC103025235,LOC107603028 coding downstream 208611 1115082 ~ 1135697 (-)
tpk2 LOC108265462,LOC108411638,LOC107599057 coding upstream 315164 1764888 ~ 1771467 (-)
ugt5e1 NA coding upstream 364553 1814277 ~ 1817419 (-)
elovl8b LOC108442366,LOC103026255,LOC108265939,LOC107657928,LOC107585829 coding upstream 542820 1992544 ~ 2000597 (-)
armh1 NA coding upstream 569103 2018827 ~ 2029019 (-)
guk1b kgua,guk1b,LOC108442369,LOC107585833,LOC107758268,LOC103024702,LOC107750510,LOC107657930 coding upstream 581213 2030937 ~ 2040411 (-)
G125017 NA non-coding downstream 113442 1230232 ~ 1230866 (-)
G125005 NA non-coding downstream 165769 1166724 ~ 1178539 (-)
G124863 jak3 non-coding downstream 372569 970318 ~ 971739 (-)
G124854 NA non-coding downstream 381382 901023 ~ 962926 (-)
G125850 NA non-coding upstream 108742 1558466 ~ 1601407 (-)
G125868 NA non-coding upstream 204735 1654459 ~ 1654935 (-)
G125875 NA non-coding upstream 228099 1677823 ~ 1718996 (-)
G125882 NA non-coding upstream 242375 1692099 ~ 1793317 (-)
G125885 NA non-coding upstream 251292 1701016 ~ 1721015 (-)
si:dkey-21p1.3 LOC108265104 other downstream 5330 1298979 ~ 1338978 (-)
sap30bp sap30bp other downstream 618423 705368 ~ 725885 (-)
itgb4 itgb4 other downstream 647190 663353 ~ 697118 (-)
LOC113525517 LOC108265356 other downstream 828255 498166 ~ 516053 (-)
lrriq3 lrriq3 other downstream 1009752 301944 ~ 334556 (-)
acbd6 NA other upstream 142246 1591970 ~ 1623229 (-)
mutyh NA other upstream 553292 2003016 ~ 2017364 (-)
dmap1 dmap1,LOC107750524,LOC107699933,LOC107758267,LOC107548533,LOC107585836,LOC107657923 other upstream 667795 2117519 ~ 2132082 (-)
tmem47 tmem47,LOC107657933,LOC107585845,LOC107717575 other upstream 857135 2306859 ~ 2332046 (-)
sema6bb sema6b,LOC108413003 other upstream 1056934 2506658 ~ 2587200 (-)

Expression


Co-expression Network