cabp4 (cabp4,LOC108265140,LOC108413084,LOC103025235,LOC107603028)


Basic Information

Item Value
gene id cabp4
gene name cabp4,LOC108265140,LOC108413084,LOC103025235,LOC107603028
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1115082 ~ 1135697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306755.1
ATCTGTTTAAAGAATGAGCCAGAAGCAACGAGGGTAAAACTTATCACACATCTGAGGAACATCAGACTTCTACAACTGAAGcaTGTCTCAGAGGAGTAAATCATCCTCGAGTCAAAAttCTTCCTCCGGTTCCTCTCCTCCATCAGATCCTCCGTTACGCTCGGCTTTGAAAAGCAGCATTAAAGAACCTAAAGCTGGGAATCAGAAGAGAAAAATCAGCCAGAGCTCAGTAACGGCGTACACGTCCTTCCTGAACACGCTGTTCGGACAGGACAGGAAGCTGATGCCGGAGGAGCtggatgagCTGCAGCTAGCCTTTAAGGAGTTCGATTATGATCAGGACGGATATCTGCACTATAAAGACGTAGCGGACTGCATGAGGACGATGGGGTACATGCCAACAGAAATGGAGCTGATCGAGATCATCCAGCAGATCAAGatgaaatggggcgGTCATGTCGATTTCGATGATTTCTGCGAGCTCATGGGTCCGAGGATGCTGATGGAGACGGCTCACATGGTGGGAATGCGAGAGCTGCACTGTGCTTTCAAACAGTTTGACTGTAATGGAGATGGAAGGATCAGCTTCGAGGAGCTGAAGGAGTCGATGAAGACGCTGCTGGGTGAAAAGCTGAAGAAAGGAGAGCTGGAGGAGATTCTGTCTGACATCGACCTCAACGGAGACGGAACCGTGGACTTTGATGaGTTCGTGATGATGCTCTCAGCTCGATGACCTCCTTCTGGAGTTCCGATGAAACGTTTCAGCTTTAAATTCACcgcataattaaataattttctcagcaattaaatgttaaaagatGTGCTGCA
>XM_034306756.1
AGAAAAACTTGGCAAAAGCAGGATAAAACAGAGATATGAGCGATTGAGTGGATCACTGCATTGTTTTTATGGTGTTTCCTCAACCTTCTTCCTCACCAGCATCACAggatcaaactttttttttgtaattgtctCCATAAAACTTCAGCAGCTTCacgtttgttttgtttttttcacagataTAACAAATACTACAACTTTGcaTGTCTCAGAGGAGTAAATCATCCTCGAGTCAAAAttCTTCCTCCGGTTCCTCTCCTCCATCAGATCCTCCGTTACGCTCGGCTTTGAAAAGCAGCATTAAAGAACCTAAAGCTGGGAATCAGAAGAGAAAAATCAGCCAGAGCTCAGTAACGGCGTACACGTCCTTCCTGAACACGCTGTTCGGACAGGACAGGAAGCTGATGCCGGAGGAGCtggatgagCTGCAGCTAGCCTTTAAGGAGTTCGATTATGATCAGGACGGATATCTGCACTATAAAGACGTAGCGGACTGCATGAGGACGATGGGGTACATGCCAACAGAAATGGAGCTGATCGAGATCATCCAGCAGATCAAGatgaaatggggcgGTCATGTCGATTTCGATGATTTCTGCGAGCTCATGGGTCCGAGGATGCTGATGGAGACGGCTCACATGGTGGGAATGCGAGAGCTGCACTGTGCTTTCAAACAGTTTGACTGTAATGGAGATGGAAGGATCAGCTTCGAGGAGCTGAAGGAGTCGATGAAGACGCTGCTGGGTGAAAAGCTGAAGAAAGGAGAGCTGGAGGAGATTCTGTCTGACATCGACCTCAACGGAGACGGAACCGTGGACTTTGATGaGTTCGTGATGATGCTCTCAGCTCGATGACCTCCTTCTGGAGTTCCGATGAAACGTTTCAGCTTTAAATTCACcgcataattaaataattttctcagcaattaaatgttaaaagatGTGCTGCA

Function

symbol description
cabp4 Predicted to enable calcium ion binding activity. Is expressed in retinal photoreceptor layer. Orthologous to human CABP4 (calcium binding protein 4).

NR:

description
PREDICTED: calcium-binding protein 4

GO: NA

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306755.1 False 828 mRNA 0.47 8 1115082 1135697
XM_034306756.1 True 949 mRNA 0.46 9 1115082 1135063

Neighbor

gene id symbol gene type direction distance location
LOC113535044 LOC108265512 coding downstream 14127 1082098 ~ 1100955 (-)
LOC113535165 b3gnt3 coding downstream 17357 1072745 ~ 1097725 (-)
LOC117597794 NA coding downstream 43703 1067561 ~ 1071379 (-)
LOC117597812 b3gnt3 coding downstream 56951 1036515 ~ 1058131 (-)
LOC117597811 NA coding downstream 79824 1031407 ~ 1035258 (-)
serping1 NA coding upstream 67031 1202728 ~ 1222668 (-)
igf3 LOC108265640 coding upstream 89955 1225652 ~ 1234425 (-)
si:dkeyp-110g5.4 NA coding upstream 100741 1236438 ~ 1242966 (-)
soat1 soat1 coding upstream 147004 1282701 ~ 1298053 (-)
LOC113535232 cacna1e,LOC108265206,LOC107100995 coding upstream 208611 1344308 ~ 1449724 (-)
G124863 jak3 non-coding downstream 143343 970318 ~ 971739 (-)
G124854 NA non-coding downstream 152156 901023 ~ 962926 (-)
G124856 NA non-coding downstream 200456 905828 ~ 914626 (-)
G124840 LOC107725316,LOC107599027 non-coding downstream 293424 819404 ~ 821658 (-)
G124837 NA non-coding downstream 306750 807190 ~ 808332 (-)
G125005 NA non-coding upstream 31027 1166724 ~ 1178539 (-)
G125017 NA non-coding upstream 94535 1230232 ~ 1230866 (-)
G125850 NA non-coding upstream 422769 1558466 ~ 1601407 (-)
G125868 NA non-coding upstream 518762 1654459 ~ 1654935 (-)
G125875 NA non-coding upstream 542126 1677823 ~ 1718996 (-)
sap30bp sap30bp other downstream 389197 705368 ~ 725885 (-)
itgb4 itgb4 other downstream 417964 663353 ~ 697118 (-)
LOC113525517 LOC108265356 other downstream 599029 498166 ~ 516053 (-)
lrriq3 lrriq3 other downstream 780526 301944 ~ 334556 (-)
G124658 NA other downstream 1098721 14898 ~ 16361 (-)
si:dkey-21p1.3 LOC108265104 other upstream 163282 1298979 ~ 1338978 (-)
acbd6 NA other upstream 456273 1591970 ~ 1623229 (-)
mutyh NA other upstream 867319 2003016 ~ 2017364 (-)
dmap1 dmap1,LOC107750524,LOC107699933,LOC107758267,LOC107548533,LOC107585836,LOC107657923 other upstream 981822 2117519 ~ 2132082 (-)
tmem47 tmem47,LOC107657933,LOC107585845,LOC107717575 other upstream 1171162 2306859 ~ 2332046 (-)

Expression


Co-expression Network