LOC113535166 (si:dkeyp-51b7.3,fibcd1,LOC108264998,LOC108265109,LOC108438350,LOC107598982,LOC107665003,LOC107725318,LOC107739453)


Basic Information

Item Value
gene id LOC113535166
gene name si:dkeyp-51b7.3,fibcd1,LOC108264998,LOC108265109,LOC108438350,LOC107598982,LOC107665003,LOC107725318,LOC107739453
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 6628168 ~ 6711114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928359.2
CTTAGCAGAGACACACTACAGAGACGCTGAGTGAgatgtgagacacacacatttttaatgactaCACATACTCTCTCATGGACGCTGCAGGATTAATACGAACTCCAACACTGCTGTGGATACACATTTATCCCAGAATACcgacatttctctctcttttttaacctatttatttttctcatcaCGTTAACGGACAGAGGAAGTTTCCTCACAGGAAGATTGGCGTGAGGAGAAGCGGCTCGCGCATCACTCGCAAACACAGccgtggttgttgttgttttcttttcttttccctctccGACATTTTCGAGCACATTTCTTGTCAAAGAACACATTTGGGACATTTTTCTTCTGATTTTTATGAGTTGTTGTCGGAGAATATTGGTGAAGGAGCTCTGCGAAAATCATGAACAGCGTGACGGAGCTTGAAGACGGACCTCAGCACAAGGCTCAGAGGACGAGCTGTAGTTACCTCCTGTGCACCATTCTCCTCTTTGTTGCTGTGCTACTAGCCGTTACAGTAACAGGCACAATCCTCTTAATGAACCACTCCCAGGCACCCTCAGGCCCCGATGCTCCACCCCTCATCACTACCAATCAAGACGAAGGCAATGCCCTGGTGACGGTGGAGAGAGGAGATGGCTCCCGCATTAACATCTTCATTGACCCCAACTGCCCTGACTACAACAGCAACTTCCTGCGACTGGAGGGGTTACAGACGTCACTGCTGCACTCGCTCAGCCACCATGACACAGACCTGAAGTCAGTGAAGGGACAGGAGCGCGCACTGCTTGTCCAGTTGGCTGAGGAAATTGCCAAGCTGTCAGCCCATGGTAGCCAGCTGAAGGCAGAGTACAGTGCGCTGAGGCAGGGCCAGAGCAGCATCAGCCAGGAGATCAACATGCTGCAGACTGAGCAGGCCAGGCTCATCCAGCTGTTGTCCGAGAGCCAAAGTAACATGATGAAGGTCGTGAACACGGTGAGTGACGTGTTCGACTCCATGCAGAAGGAACCTGGCAGCATGAAGGTGTTCCTGAAGGCAGACTTGCAGAGGGCTCCAGTACGCAGCGGTGTCCGGCCCAGGGGCTGCTCCAGCGGAGAGGgccGACCAAGAGACTGCAGTGATATTTATGCTAGTGGACAGCATGAAGACGGGATCTACTCCATCTTTCCCATACACTTCCCCTCAGGCTTCCAGGTTTACTGTGACATGAGCACTGAGGGAGGTGGCTGGACGGTGTTCCAGCGCAGAGAAGACGGCTCTGTAAACTTCTACAGGGACTGGGCCGCGTATCAAGAGGGATTTGGCAAGATTACAGGAGAACACTGGCTTGGTCTGAAGCGGATTCATGCTCTGACCATTCAGGCTAATTATGAGTTGAGGATTGACCTGGAGGACTTTGAGAACAGCACTTCCTTCGCACAGTATGGATCCTTTGGCGTGGGATTGTTCTCCGTTGACCCAGATGAGGACGGCTACCCGTTGAGCATAGCGGACTACTCAGGAACCGCTGGTGACTCATTGCTCAAACACAACAGCATGAAGTTCACTACAAAGGACAAGGACAACGATCACTCGGAGAACAACTGTGCCTCCTTCTACCACGGAGCCTGGTGGTACCGGAACTGCCACATGTCCAACCTGAATGGACAGTACCTGCGTGGCCAGCACTCGTCCTACGCCGACGGCATCGAGTGGTACTCCTGGACTGGTTTGCAGTACTCCCTAAAATTCACGGAGATGAAAATCAGGCCTACATGTGAGCAAAACGAATGAGTGAAGCACAAGAGGATCTTCAGCATGTAGGTGTTAGAGACACTAGCTACAGAAATGAGCGAGGACTGTATGATGATGTATTCTCCTCCTGTTTTGTGTGGTTCTGTTTCCAAACCCTTTTTCCATCGTCCACCATTCCAGTcatagtgtagtgttagtgatGAAACGCACTCTAGCTGGTTACTTCTCTTCTGAATATTATGAAACCATGAAGTCAGTTATGTCTTAAGGTTATTGttgatgaaatgtaaaaaaaaaaaaaaggcttcc

Function

symbol description
fibcd1 Enables chitin binding activity. Predicted to be involved in cell adhesion. Located in membrane.

NR:

description
PREDICTED: fibrinogen C domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928359.2 True 2047 mRNA 0.50 8 6628168 6711114

Neighbor

gene id symbol gene type direction distance location
LOC113535258 stkld1 coding downstream 337571 6282187 ~ 6290597 (-)
tasor2 LOC108265447 coding downstream 347407 6257381 ~ 6280761 (-)
si:ch211-204d2.4 plekha2,LOC108414546 coding downstream 376355 6241422 ~ 6251813 (-)
asb13b asb13,asb13b,LOC108266053,LOC107734516,LOC107725307 coding downstream 389385 6233871 ~ 6238783 (-)
nras nras,LOC107598969,LOC107725308 coding downstream 395626 6225293 ~ 6232542 (-)
endog endog,LOC107736532 coding upstream 203102 6914216 ~ 6919712 (-)
atp2a2a atp2a2,atp2a2a,LOC108265716,LOC107757297 coding upstream 416572 7127686 ~ 7163510 (-)
ift81 ift81 coding upstream 455669 7166783 ~ 7189430 (-)
LOC113535329 LOC108265610,LOC108438364,LOC107757293,LOC107664975 coding upstream 519775 7230889 ~ 7285503 (-)
fxn fxn,LOC108265371,LOC108265194,LOC107664976 coding upstream 608798 7319912 ~ 7331418 (-)
G127913 NA non-coding downstream 526698 6099635 ~ 6101470 (-)
G127705 NA non-coding downstream 916405 5711559 ~ 5711763 (-)
LOC117597776 NA non-coding downstream 999555 5597825 ~ 5628613 (-)
G127597 NA non-coding downstream 1155321 5448027 ~ 5472847 (-)
G127595 NA non-coding downstream 1201291 5412259 ~ 5426877 (-)
G128372 NA non-coding upstream 80415 6791529 ~ 6793100 (-)
G128373 NA non-coding upstream 82346 6793460 ~ 6793866 (-)
G128571 NA non-coding upstream 468406 7179520 ~ 7227451 (-)
G128591 NA non-coding upstream 515252 7226366 ~ 7268653 (-)
LOC113535317 NA non-coding upstream 735897 7447011 ~ 7450045 (-)
abt1 abt1 other downstream 1782388 4841421 ~ 4845780 (-)
cdk16 cdk16,LOC107674341,LOC107584883,LOC107601769,LOC107653433 other downstream 1814491 4774550 ~ 4813677 (-)
zgc:113363 LOC108265528 other downstream 2131273 4478075 ~ 4496895 (-)
gata1b LOC108266041 other downstream 2339429 4281917 ~ 4288739 (-)
rexo1 rexo1 other downstream 2534224 4076055 ~ 4093944 (-)
ntng2a ntng2,ntng2a,LOC107557204,LOC107757289,LOC107674329,LOC107725312,LOC108438355,LOC107664998,LOC106585788 other upstream 211655 6922769 ~ 6989679 (-)
smim15 smim15 other upstream 931101 7642215 ~ 7691454 (-)
G129009 LOC108265192 other upstream 1066402 7777516 ~ 7796821 (-)
LOC117597796 LOC108265274 other upstream 1117659 7828773 ~ 7842276 (-)
mad2l2 mad2l2 other upstream 1131413 7842527 ~ 7856477 (-)

Expression


Co-expression Network