LOC113535258 (stkld1)


Basic Information

Item Value
gene id LOC113535258
gene name stkld1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 6282187 ~ 6290597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928499.2
caacaCACAACCGTCTCCTCAGTAATGTGGCGCTGAAAGACTTAGCTAGAGAGCTAAAAGCTTTTCTATTATGGAGAATTATGTGGTTGTAGATGTGATGTGTCCAGGGTCCTTTGGTATGACCTTTTTAGTAGAAGACAGAAATTCTGGCTTGGAATACACATTGAAGAAGGTGGAATGTTTGGATGAAACTAGAGCCAATCGAAGCCTACAGGAGGCTTTGTGTCTCCTCAATGTGAATCACCCAAACATCGTCAGATACAGAGAGTTATTCGTATTGTGGGATAAACATATAACATCGTCCATGCTTTCAATGGTGATGGACTGTCCATATATGACCAGCCTCAAAATAGTCATCTCATCTCAAAGGGAGCAAAAAGAGAAGTTTGAAGACAAGtgtgtacagatgTTCTTGGGACAAATGGTGGATGCACTGGCCTACCTTcacaacagaaacattttacacaGAAATCTGAAACCATCCAACATTTTGATGAGCAGTGACTCTGTCTTTCGCATATGTGATTTTGGAACAGCAACTATCACACAAGATCGAGCAAAGATTCATATAAGAATCAAAGAGAGTGAGAAGTGCTGGATGGCCCCTGAGAGCGTGAGACTGCTCCAGTGGAGTGACAAGTCTGACATCTGGTCACTCGGCTGTGTCCTCCTGGATATGCTGATATGTCACATACTCAATGAGGAGGCCTCTTTGTCACAGTTGAGTCAATTGAGGCAAGACCTCAGTCCTTTGGATTTCATCATATGCAAAGACCTTCGCAAGCTCCTCACCAGGATGTTAAGCCACAATCTGAAAACTAGAGCCAATGTCTGGGTGCTGGCAAATGAAGCTCTTGTGAAACAATGTCTGATTCTCTGTGGTTCTTCACCACATTCAATTAAGCGGACTCTTCCTCAAGGAGTCACTGGGCCGCCATTCCATGAAGGGATTGACAGTGTTTTGGattttatgaTGACTTATACCGATGTGGAGGCCATTCAACTTTCTGTTCTGTCACACCTACTGAAGGTGGAAAGAAATGCCTTGGGCAGAATTGGTGATGTGGTAGAGGCTGTGACTTCTGCTATGCTCAGCCACTCTGAGTCAGCTTGCATTCAGCTGAAATCATTCCAGCTCCTACAACTGCTTCTATCTGCAGGACAGTATATTGACAAGGACTGTTGCCTGTGTGGAGAAAAAGTTATTTCCTGTGTCCTGGAAGCTGTGCAGAACAATCCAAAGAACACAGATCTGCTAGCTAATGCCTTTCAAGTGCTCTTGCTCATTTCAGTAAATGAGAAAGCCTGTGAACTGATTGTGAAACTGGACAGTGTTCGTCAAGTATTGAATACATTAAAGGACTACCCGCAGGAGAAGGATATCATCATCCCTTGCtgcaaaatcatacagtgtacaCTGGAAAAAGGCTATGGTGCTCCAGAATCATTTCCAGATGCTGTTGAGACTTTGTGCATTGTGGGTGAAATGCATCTGCAAGATGCAGTTGTGACAGAATGCTTGTGTGCTGCACTACAGTTTCTGATTAGTCAAGCTCTACATGAAGAGAAAGATATTGAAAAGGCTACATGTGTCTTGATGCATGAACTCAAAAGTCATCCAAATGAAGCTACTATAGTGAACCATGTGTTTGTCGCCATGGCCGGTTTAATCAAAACCTCAGAGACTGCTGCTTTACAGCTTCTCCATGTACTAGATGAAAGGAATGGTGTTTATCACATCATAGCCACGCGAAGACATCATTCGGATTGCCCAAAAGTCACAGAGAACTTTTGCAATCTTCTGAAGCAGCTGGTCCAACATGATGCTATCATTCCTGAATTGCTTGCTGAAAATGTACAGGAAGAATTGGAGCAGATATTGCAACAATATGAGTCCATCACGGAGACTGTACTGTTGGCACAGGACGCCCTGTCGAAAATGATGAGCCTTAATGACGTAGAGTCGACAAGTTCAGCATGACCACCTCCGGCACATCACTACTAATATAGTGAACTAACACATATTGTAATGTTTGGATACAGGGCTTTGGACTCAGGTCTACAGTGCTGTCTGTGGATACTGTGACaatcttgttgttgttgtccagAAATGCTTGGAGTACTAAGAATTGTTACCTAGATCACAAACAGCATCACCAGATGAAAGGCAAATTTCTGTCCACCCTTTTCTcaaattctgattaaattaTATGCACTTTGCAAGTCAAGCTTAGTGTAATCACCTACATCTTACACTTgctattctaaaaaaaaaaagtatcagcTTTTCCTTCATGCCAATCAAACAACTATGCTGTAGATTCAGTAGAAGATGCTGTACCTTGTATATCTAGACTTTAGAGAGTATACTCAAGAACCTCTTGCTTAAGGTTGCACCAGGCCCTCCAATTCACCGGCACCAGCAGGGATTTTTCCGTGGAGAAGAAGGGAGCAGGGTCATCACCTCCGTATTGATTACATGTGAATAAGATTACCATGAAGCCCCTTGATGTTCTCATTTTAGAACCACTTAGAAGAGCCTGTTATTTTACAAAACTTGATTTATGCAGCACCTATAACAAGTGGAAAACAAGTGGAAGACAGATTTCATCACAAGCTTTTGCCATTTTGAATATTTAGTTATATCATATAGCCTGGCTAATGCCCTTGATCTTCCAGTCTTTTATTAATGAGATCCAGAGAGATATGCTAGACTACAAGAGCTTATATTTACACCATGGTGATGCAGGGGCACTGCTGATT

Function

symbol description
stkld1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation.

NR:

description
PREDICTED: serine/threonine kinase-like domain-containing protein STKLD1 isoform X1

GO: NA

KEGG:

id description
K17546 STKLD1; serine/threonine kinase-like domain-containing protein STKLD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928499.2 True 2763 mRNA 0.42 19 6282187 6290597

Neighbor

gene id symbol gene type direction distance location
tasor2 LOC108265447 coding downstream 1426 6257381 ~ 6280761 (-)
si:ch211-204d2.4 plekha2,LOC108414546 coding downstream 30374 6241422 ~ 6251813 (-)
asb13b asb13,asb13b,LOC108266053,LOC107734516,LOC107725307 coding downstream 43404 6233871 ~ 6238783 (-)
nras nras,LOC107598969,LOC107725308 coding downstream 49645 6225293 ~ 6232542 (-)
ampd1 ampd1 coding downstream 57099 6211618 ~ 6225088 (-)
LOC113535166 si:dkeyp-51b7.3,fibcd1,LOC108264998,LOC108265109,LOC108438350,LOC107598982,LOC107665003,LOC107725318,LOC107739453 coding upstream 337571 6628168 ~ 6711114 (-)
endog endog,LOC107736532 coding upstream 623619 6914216 ~ 6919712 (-)
atp2a2a atp2a2,atp2a2a,LOC108265716,LOC107757297 coding upstream 837089 7127686 ~ 7163510 (-)
ift81 ift81 coding upstream 876186 7166783 ~ 7189430 (-)
LOC113535329 LOC108265610,LOC108438364,LOC107757293,LOC107664975 coding upstream 940292 7230889 ~ 7285503 (-)
G127913 NA non-coding downstream 180717 6099635 ~ 6101470 (-)
G127705 NA non-coding downstream 570424 5711559 ~ 5711763 (-)
LOC117597776 NA non-coding downstream 653574 5597825 ~ 5628613 (-)
G127597 NA non-coding downstream 809340 5448027 ~ 5472847 (-)
G127595 NA non-coding downstream 855310 5412259 ~ 5426877 (-)
G128372 NA non-coding upstream 500932 6791529 ~ 6793100 (-)
G128373 NA non-coding upstream 502863 6793460 ~ 6793866 (-)
G128571 NA non-coding upstream 888923 7179520 ~ 7227451 (-)
G128591 NA non-coding upstream 935769 7226366 ~ 7268653 (-)
LOC113535317 NA non-coding upstream 1156414 7447011 ~ 7450045 (-)
abt1 abt1 other downstream 1436407 4841421 ~ 4845780 (-)
cdk16 cdk16,LOC107674341,LOC107584883,LOC107601769,LOC107653433 other downstream 1468510 4774550 ~ 4813677 (-)
zgc:113363 LOC108265528 other downstream 1785292 4478075 ~ 4496895 (-)
gata1b LOC108266041 other downstream 1993448 4281917 ~ 4288739 (-)
rexo1 rexo1 other downstream 2188243 4076055 ~ 4093944 (-)
ntng2a ntng2,ntng2a,LOC107557204,LOC107757289,LOC107674329,LOC107725312,LOC108438355,LOC107664998,LOC106585788 other upstream 632172 6922769 ~ 6989679 (-)
smim15 smim15 other upstream 1351618 7642215 ~ 7691454 (-)
G129009 LOC108265192 other upstream 1486919 7777516 ~ 7796821 (-)
LOC117597796 LOC108265274 other upstream 1538176 7828773 ~ 7842276 (-)
mad2l2 mad2l2 other upstream 1551930 7842527 ~ 7856477 (-)

Expression


Co-expression Network