LOC117597850


Basic Information

Item Value
gene id LOC117597850
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11355449 ~ 11359380 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578615.1
ctcGAAGACCCGGCAGCTAATGACGTCAGAGGCAGAGAATAAGTACCCCGGCGAGCTTTTGTGGCGACCTTTCTCACCGCCGCTGGCCGGCCCGAGCGCGCCTGGAGCTGCACTGCCTCCCGGGAACTCCTGCTGAACCGAATTTTCTCCTGAGATGAGATTGGGAAAGGGAACTGCAAGAAACTGCAAGAACTAAAGTTTCAACAGCTATTATTTCCCCCCAAATGTTTAGTAAATTATCTAAAGACAAACGTCATCAAAAGGTAAAAACACAAACTGCAAGTGAAATTATCCAaagagcataataataa

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578615.1 True 311 lncRNA 0.47 3 11355449 11359380

Neighbor

gene id symbol gene type direction distance location
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC103028496 coding upstream 66531 11219551 ~ 11288918 (+)
dnttip2 LOC102796155 coding upstream 453373 10895439 ~ 10902076 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding upstream 461398 10883535 ~ 10894051 (+)
slc5a9 slc5a9,LOC107757988 coding upstream 472445 10875410 ~ 10883004 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding upstream 564535 10743725 ~ 10790914 (+)
cdkn2c cdkn2c coding downstream 77005 11436385 ~ 11447884 (+)
si:ch211-198n5.11 LOC108265604 coding downstream 229444 11588824 ~ 11596613 (+)
LOC113538016 NA coding downstream 238401 11597781 ~ 11608557 (+)
magoh mgn,magoh,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding downstream 337503 11696883 ~ 11699368 (+)
spryd4 spryd4 coding downstream 355563 11714943 ~ 11716674 (+)
LOC113527270 NA non-coding upstream 407103 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 438824 10916337 ~ 10916625 (+)
G130611 NA non-coding upstream 444074 10911164 ~ 10911375 (+)
G130609 spata6 non-coding upstream 445242 10909893 ~ 10910207 (+)
G130608 NA non-coding upstream 446732 10908354 ~ 10908717 (+)
G130960 NA non-coding downstream 189582 11548962 ~ 11552031 (+)
G131061 NA non-coding downstream 357452 11716832 ~ 11717885 (+)
G131279 NA non-coding downstream 857624 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 866772 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 1160514 12519894 ~ 12533258 (+)
mrpl55 mrpl55 other upstream 481323 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 614024 10706719 ~ 10741425 (+)
tmem51a tmem51 other upstream 658618 10683078 ~ 10696831 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other upstream 791888 10543919 ~ 10563561 (+)
G130390 NA other upstream 997134 10357946 ~ 10358315 (+)
LOC113530800 LOC108266038 other downstream 262922 11622302 ~ 11633844 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other downstream 318131 11677511 ~ 11696791 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other downstream 346167 11705547 ~ 11714032 (+)
foxp3a LOC108265789 other downstream 619806 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 837213 12196593 ~ 12230001 (+)

Expression


Co-expression Network